6DJJ
Crystal structure of Tdp1 catalytic domain in complex with compound XZ532
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6djja1 | Alpha and beta proteins (a+b) | Phospholipase D/nuclease | Phospholipase D/nuclease | Tyrosyl-DNA phosphodiesterase TDP1 | Tyrosyl-DNA phosphodiesterase TDP1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6djjb1 | Alpha and beta proteins (a+b) | Phospholipase D/nuclease | Phospholipase D/nuclease | Tyrosyl-DNA phosphodiesterase TDP1 | Tyrosyl-DNA phosphodiesterase TDP1 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Phospholipase D/nuclease-like | 8037447 | 3000664 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Phospholipase D/nuclease-like | 8037449 | 3000664 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Phospholipase D/nuclease-like | 8037447 | 3000664 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Phospholipase D/nuclease-like | 8037449 | 3000664 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Tyr-DNA_phospho_1st | e6djjA2 | A: a+b three layers | X: Phospholipase D/nuclease (From Topology) | H: Phospholipase D/nuclease (From Topology) | T: Phospholipase D/nuclease | F: Tyr-DNA_phospho_1st | ECOD (1.6) |
A | Tyr-DNA_phospho_2nd | e6djjA1 | A: a+b three layers | X: Phospholipase D/nuclease (From Topology) | H: Phospholipase D/nuclease (From Topology) | T: Phospholipase D/nuclease | F: Tyr-DNA_phospho_2nd | ECOD (1.6) |
B | Tyr-DNA_phospho_1st | e6djjB2 | A: a+b three layers | X: Phospholipase D/nuclease (From Topology) | H: Phospholipase D/nuclease (From Topology) | T: Phospholipase D/nuclease | F: Tyr-DNA_phospho_1st | ECOD (1.6) |
B | Tyr-DNA_phospho_2nd | e6djjB1 | A: a+b three layers | X: Phospholipase D/nuclease (From Topology) | H: Phospholipase D/nuclease (From Topology) | T: Phospholipase D/nuclease | F: Tyr-DNA_phospho_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.870.10 | Alpha Beta | 2-Layer Sandwich | Endonuclease | Chain A | CATH (utative) |
B | 3.30.870.10 | Alpha Beta | 2-Layer Sandwich | Endonuclease | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06087 | Tyrosyl-DNA phosphodiesterase (Tyr-DNA_phospho) | Tyrosyl-DNA phosphodiesterase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010347 | Tyrosyl-DNA phosphodiesterase I | Family |