6DFJ
Crystal structure of anti-Zika antibody Z021 bound to DENV-1 envelope protein DIII
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth L] | d6dfjl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth L] | d6dfjl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A [auth H] | d6dfjh1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A [auth H] | d6dfjh2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth E] | d6dfje_ | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (dengue virus type 1 ) [TaxId: 11053 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth E] | SCOP2 Family | Class II viral fusion proteins C-terminal domain | 8073029 | 4007569 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2 Superfamily | E set domains | 8073030 | 3000070 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth L] | C1-set_4 | e6dfjL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth L] | V-set | e6dfjL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
A [auth H] | V-set_8 | e6dfjH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A [auth H] | C1-set_1 | e6dfjH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth E] | Flavi_glycop_C | e6dfjE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth E] | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth L] | Fab Z021, anti-Zika | L-KAPPA | Homo sapiens (human) | IGKV3-11*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
A [auth H] | Fab Z021, anti-Zika | VH-CH1 | Homo sapiens (human) | IGHV4-59*01, IGHV4-59*08, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L] | Light Chain | IGKV3 | Kappa | dengue 1 envelope diii domain | SAbDab (2024-10-11) |
A [auth H] | Heavy Chain | IGHV4 | - | dengue 1 envelope diii domain | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth E] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth E] | IPR038345 | Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily | Homologous Superfamily |
C [auth E] | IPR026470 | Flavivirus envelope glycoprotein E, Stem/Anchor domain | Domain |
C [auth E] | IPR011998 | Envelope glycoprotein E, central and dimerisation domain, flavivirus | Domain |
C [auth E] | IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily |
C [auth E] | IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily |
C [auth E] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
C [auth E] | IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain |
C [auth E] | IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily |
C [auth E] | IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth E] | IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |