6D9K
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07584 | e6d9kA3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07584 | ECOD (1.6) |
A | EUF08369 | e6d9kA1 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08369 | ECOD (1.6) |
A | EUF08370 | e6d9kA5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08370 | ECOD (1.6) |
A | Piwi_N | e6d9kA2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N | ECOD (1.6) |
A | Piwi_C_1 | e6d9kA4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C_1 | ECOD (1.6) |
D [auth F] | EUF07584 | e6d9kF5 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07584 | ECOD (1.6) |
D [auth F] | EUF08369 | e6d9kF3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08369 | ECOD (1.6) |
D [auth F] | EUF08370 | e6d9kF2 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08370 | ECOD (1.6) |
D [auth F] | Piwi_N | e6d9kF1 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N | ECOD (1.6) |
D [auth F] | Piwi_C_1 | e6d9kF4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth F] | PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
C [auth G], F [auth J] | DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*GP*GP*CP*AP*GP*TP*AP*AP*C)-3') | - | - | - |
A, D [auth F] | Uncharacterized protein |
| - | |
B [auth C], E [auth H] | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth F] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, D [auth F] | IPR003165 | Piwi domain | Domain |
A, D [auth F] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |