6D03
Cryo-EM structure of a Plasmodium vivax invasion complex essential for entry into human reticulocytes; one molecule of parasite ligand.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PA domain | 8043922 | 3000955 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Transferrin receptor-like dimerisation domain | 8037591 | 3000375 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zn-dependent exopeptidases | 8032205 | 3000662 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PA domain | 8043922 | 3000955 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Transferrin receptor-like dimerisation domain | 8037591 | 3000375 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type 2 solute binding protein-like | 8041066 | 3000083 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8041066 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TFR_dimer | e6d03A3 | A: alpha bundles | X: N-cbl like | H: Transferrin receptor ectodomain, C-terminal domain (From Topology) | T: Transferrin receptor ectodomain, C-terminal domain | F: TFR_dimer | ECOD (1.6) |
A | Peptidase_M28 | e6d03A2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
A | PA | e6d03A1 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA | ECOD (1.6) |
B | TFR_dimer | e6d03B3 | A: alpha bundles | X: N-cbl like | H: Transferrin receptor ectodomain, C-terminal domain (From Topology) | T: Transferrin receptor ectodomain, C-terminal domain | F: TFR_dimer | ECOD (1.6) |
B | Peptidase_M28 | e6d03B2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
B | PA | e6d03B1 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PA | ECOD (1.6) |
C | Transferrin_2nd | e6d03C1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_2nd | ECOD (1.6) |
C | Transferrin_1st | e6d03C3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_1st | ECOD (1.6) |
D | Transferrin_2nd | e6d03D2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_2nd | ECOD (1.6) |
D | Transferrin_1st | e6d03D1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
A | 3.50.30.30 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
A | 1.20.930.40 | Mainly Alpha | Up-down Bundle | Transcription Elongation Factor S-II | Chain A | CATH (4.3.0) |
B | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
B | 3.50.30.30 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
B | 1.20.930.40 | Mainly Alpha | Up-down Bundle | Transcription Elongation Factor S-II | Chain A | CATH (4.3.0) |
C | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
D | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04253 | Transferrin receptor-like dimerisation domain (TFR_dimer) | Transferrin receptor-like dimerisation domain | This domain is involved in dimerisation of the transferrin receptor as shown in its crystal structure. | Domain | |
PF04389 | Peptidase family M28 (Peptidase_M28) | Peptidase family M28 | - | Family | |
PF02225 | PA domain (PA) | PA domain | - | Family | |
PF00405 | Transferrin (Transferrin) | Transferrin | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036757 | Transferrin receptor-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR039373 | Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like | Family | |
IPR003137 | PA domain | Domain | |
IPR046450 | PA domain superfamily | Homologous Superfamily | |
IPR007365 | Transferrin receptor-like, dimerisation domain | Domain | |
IPR037324 | Transferrin receptor protein 1/2, PA domain | Domain | |
IPR007484 | Peptidase M28 | Domain | |
IPR016357 | Transferrin | Family | |
IPR001156 | Transferrin-like domain | Domain | |
IPR018195 | Transferrin family, iron binding site | Binding Site | |
IPR030685 | Serotransferrin, mammalian | Family | |
IPR031789 | NBD94 domain | Domain |