Crystal structure of particulate methane monooxygenase from Methylomicrobium alcaliphilum 20Z
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Monooxygenase subunit B copper-binding domain-like | 8061309 | 4005056 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Monooxygenase subunit B transmembrane domain-like | 8095946 | 4007811 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Monooxygenase subunit B C-terminal domain-like | 8095947 | 4007812 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | PapD-like | 8095948 | 3002067 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095949 | 3002711 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095950 | 3002712 | SCOP2 (2022-06-29) |
| B | SCOP2 Family | Ammonia monooxygenase-like | 8061759 | 4006879 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Gx transporter-like | 8095954 | 3002268 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | CHORD | e6cxhA1 | A: beta barrels | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: CHORD | ECOD (v294.2) |
| B | CHORD | e6cxhB1 | A: beta barrels | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: CHORD | ECOD (v294.2) |
| C | HATPase_c_5 | e6cxhC01 | A: beta barrels | X: Voltage-gated ion channels | H: Voltage-gated ion channels | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: HATPase_c_5 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.570 | Mainly Beta | Sandwich | Jelly Rolls | Particulate methane monooxygenase, b subunit. Chain: A, domain 1 | CATH (4.3.0) |
| A | 1.10.287.710 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
| A | 2.60.40.1580 | Mainly Beta | Sandwich | Immunoglobulin-like | Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | CATH (4.3.0) |
| B | 1.20.1450.10 | Mainly Alpha | Up-down Bundle | particulate methane monooxygenase, chain B | Ammonia/particulate methane monooxygenase, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04744 | Monooxygenase subunit B protein (Monooxygenase_B) | Monooxygenase subunit B protein | - | Family | |
| PF02461 | Ammonia monooxygenase (AMO) | Ammonia monooxygenase | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006833 | Ammonia monooxygenase/particulate methane monooxygenase, subunit B | Family | |
| IPR023141 | Ammonia/methane monooxygenase, subunit B, hairpin domain superfamily | Homologous Superfamily | |
| IPR023303 | Ammonia/methane monooxygenase, subunit B, C-terminal | Homologous Superfamily | |
| IPR023301 | Ammonia/methane monooxygenase, subunitB, N-terminal | Homologous Superfamily | |
| IPR037001 | Ammonia/particulate methane monooxygenase, subunit A superfamily | Homologous Superfamily | |
| IPR003393 | Ammonia monooxygenase/particulate methane monooxygenase, subunit A | Family | |
| IPR006980 | Ammonia monooxygenase/particulate methane monooxygenase, subunit C | Family | |
| IPR023349 | Ammonia monooxygenase/particulate methane monooxygenase, subunit C domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Methane monooxygenase | Methane monooxygenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














