6BYW
Structure of GoxA from Pseudoalteromonas luteoviolacea
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | LodA_1st | e6bywB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LodA_1st | ECOD (1.6) |
A [auth B] | LodA_2nd | e6bywB2 | A: a+b complex topology | X: L-Lys epsilon-oxidase C-terminal domain (From Topology) | H: L-Lys epsilon-oxidase C-terminal domain (From Topology) | T: L-Lys epsilon-oxidase C-terminal domain | F: LodA_2nd | ECOD (1.6) |
B [auth A] | LodA_1st | e6bywA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LodA_1st | ECOD (1.6) |
B [auth A] | LodA_2nd | e6bywA1 | A: a+b complex topology | X: L-Lys epsilon-oxidase C-terminal domain (From Topology) | H: L-Lys epsilon-oxidase C-terminal domain (From Topology) | T: L-Lys epsilon-oxidase C-terminal domain | F: LodA_2nd | ECOD (1.6) |
C | LodA_1st | e6bywC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LodA_1st | ECOD (1.6) |
C | LodA_2nd | e6bywC2 | A: a+b complex topology | X: L-Lys epsilon-oxidase C-terminal domain (From Topology) | H: L-Lys epsilon-oxidase C-terminal domain (From Topology) | T: L-Lys epsilon-oxidase C-terminal domain | F: LodA_2nd | ECOD (1.6) |
D | LodA_1st | e6bywD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LodA_1st | ECOD (1.6) |
D | LodA_2nd | e6bywD1 | A: a+b complex topology | X: L-Lys epsilon-oxidase C-terminal domain (From Topology) | H: L-Lys epsilon-oxidase C-terminal domain (From Topology) | T: L-Lys epsilon-oxidase C-terminal domain | F: LodA_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF17990 | L-Lysine epsilon oxidase N-terminal (LodA_N) | L-Lysine epsilon oxidase N-terminal | This is the N-terminal domain found in antimicrobial protein (LodA) with lysine-epsilon oxidase activity (EC 1.4.3.20) which is produced by gram-negative marine bacteria such as Marinomonas mediterranea [1]. The enzyme, previously named marinocine, c ... | Domain |
A [auth B], B [auth A], C, D | PF18417 | L-lysine epsilon oxidase C-terminal domain (LodA_C) | L-lysine epsilon oxidase C-terminal domain | This is the C-terminal domain of L-Lysine epsilon-oxidase (LodA, EC 1.4.3.20), an enzyme which catalyses the oxidative deamination of free L-lysine into L-2-aminoadipate 6-semialdehyde, ammonia and hydrogen peroxide [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A], C, D | GoxA | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D | IPR041168 | L-Lysine epsilon oxidase, N-terminal | Domain |
A [auth B], B [auth A], C, D | IPR041173 | L-lysine epsilon oxidase, C-terminal | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth B], B [auth A], C, D | TRQ | Parent Component: TRP :  AA0148 :  oxidation of tryptophan to L-tryptophyl quinone MOD:00157 |