6BYS
Structures of the PKA RI alpha holoenzyme with the FLHCC driver J-PKAc alpha or native PRKAc alpha
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069143 | 3000066 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069143 | 3000066 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069143 | 3000066 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8069143 | 3000066 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | cAMP-binding domain-like | 8036784 | 3000084 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | cAMP-binding domain-like | 8036785 | 3000084 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | cAMP-binding domain-like | 8036784 | 3000084 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | cAMP-binding domain-like | 8036785 | 3000084 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | cAMP-binding domain-like | 8036785 | 3000084 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | cAMP-binding domain-like | 8036784 | 3000084 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | cAMP-binding domain-like | 8036784 | 3000084 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | cAMP-binding domain-like | 8036785 | 3000084 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pkinase_Tyr | e6bysA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
C | Pkinase_Tyr | e6bysC1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
E | Pkinase_Tyr | e6bysE1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
G | Pkinase_Tyr | e6bysG1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
D | cNMP_binding_1 | e6bysD2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
B | cNMP_binding_1 | e6bysB1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
F | cNMP_binding_1 | e6bysF1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
H | cNMP_binding_1 | e6bysH1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000719 | Protein kinase domain | Domain | |
IPR044109 | cAMP-dependent protein kinase catalytic subunit | Family | |
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR000961 | AGC-kinase, C-terminal | Domain | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR050503 | cAMP-dependent kinase regulatory chain | Family | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily | |
IPR018488 | Cyclic nucleotide-binding, conserved site | Conserved Site | |
IPR003117 | cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | Domain | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR012198 | cAMP-dependent protein kinase regulatory subunit | Family | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily |