Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6byha2 All alpha proteins Skp1 dimerisation domain-like Skp1 dimerisation domain-like Skp1 dimerisation domain-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6byha1 Alpha and beta proteins (a+b) POZ domain POZ domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6byha3 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6byhb2 All alpha proteins Skp1 dimerisation domain-like Skp1 dimerisation domain-like Skp1 dimerisation domain-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6byhb1 Alpha and beta proteins (a+b) POZ domain POZ domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6byhb3 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth G]d6byhg2 All alpha proteins Skp1 dimerisation domain-like Skp1 dimerisation domain-like Skp1 dimerisation domain-like automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth G]d6byhg1 Alpha and beta proteins (a+b) POZ domain POZ domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth G]d6byhg3 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth D]d6byhd1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth D]d6byhd2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth H]d6byhh1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
I [auth H]d6byhh2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth C]d6byhc1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth C]d6byhc2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPOZ domain 8035033 3000894 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySkp1 dimerisation domain-like 8038683 3000564 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySkp1 dimerisation domain-like 8038683 3000564 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPOZ domain 8035033 3000894 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyPOZ domain 8035033 3000894 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilySkp1 dimerisation domain-like 8038683 3000564 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
I [auth H]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASkp1_POZe6byhA1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
BSkp1_POZe6byhB1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
E [auth G]Skp1_POZe6byhG1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZECOD (1.6)
D [auth F]F-box-like_1e6byhF1 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_1ECOD (1.6)
C [auth E]F-box-like_1e6byhE1 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_1ECOD (1.6)
F [auth I]F-box-like_1e6byhI1 A: alpha arraysX: F-box domain (From Topology)H: F-box domain (From Topology)T: F-box domainF: F-box-like_1ECOD (1.6)
H [auth D]ubiquitin_1e6byhD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
I [auth H]ubiquitin_1e6byhH1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
G [auth C]ubiquitin_1e6byhC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (utative)
B3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (utative)
E [auth G]3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
E [auth G]
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domain- Domain
A,
B,
E [auth G]
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
C [auth E],
D [auth F],
F [auth I]
PF00646F-box domain (F-box)F-box domainThis domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07 ...This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07723) and the WD repeat (Pfam:PF00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression [1-2].
Domain
G [auth C],
H [auth D],
I [auth H]
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
E [auth G]
S-phase kinase-associated protein 1
C [auth E],
D [auth F],
F [auth I]
Lysine-specific demethylase 2A
G [auth C],
H [auth D],
I [auth H]
Polyubiquitin-B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
E [auth G]
IPR016073SKP1 component, POZ domainDomain
A,
B,
E [auth G]
IPR001232S-phase kinase-associated protein 1-likeFamily
A,
B,
E [auth G]
IPR036296SKP1-like, dimerisation domain superfamilyHomologous Superfamily
A,
B,
E [auth G]
IPR016072SKP1 component, dimerisationDomain
A,
B,
E [auth G]
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
A,
B,
E [auth G]
IPR016897S-phase kinase-associated protein 1Family
C [auth E],
D [auth F],
F [auth I]
IPR001965Zinc finger, PHD-typeDomain
C [auth E],
D [auth F],
F [auth I]
IPR001810F-box domainDomain
C [auth E],
D [auth F],
F [auth I]
IPR003347JmjC domainDomain
C [auth E],
D [auth F],
F [auth I]
IPR041070Jumonji, helical domainDomain
C [auth E],
D [auth F],
F [auth I]
IPR002857Zinc finger, CXXC-typeDomain
C [auth E],
D [auth F],
F [auth I]
IPR019787Zinc finger, PHD-fingerDomain
C [auth E],
D [auth F],
F [auth I]
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
C [auth E],
D [auth F],
F [auth I]
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
C [auth E],
D [auth F],
F [auth I]
IPR050690JHDM1 Histone DemethylaseFamily
C [auth E],
D [auth F],
F [auth I]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
C [auth E],
D [auth F],
F [auth I]
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
C [auth E],
D [auth F],
F [auth I]
IPR006553Leucine-rich repeat, cysteine-containing subtypeRepeat
G [auth C],
H [auth D],
I [auth H]
IPR019954Ubiquitin conserved siteConserved Site
G [auth C],
H [auth D],
I [auth H]
IPR050158Ubiquitin and ubiquitin-likeFamily
G [auth C],
H [auth D],
I [auth H]
IPR000626Ubiquitin-like domainDomain
G [auth C],
H [auth D],
I [auth H]
IPR019956Ubiquitin domainDomain
G [auth C],
H [auth D],
I [auth H]
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily