6BYH
Ubiquitin Variant (UbV.Fl11.1) bound to a human Skp1-Fbl11 fragment complex.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | POZ domain | 8035033 | 3000894 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8038683 | 3000564 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8038683 | 3000564 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | POZ domain | 8035033 | 3000894 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | POZ domain | 8035033 | 3000894 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8038683 | 3000564 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
I [auth H] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8101457 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Skp1_POZ | e6byhA1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
B | Skp1_POZ | e6byhB1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
E [auth G] | Skp1_POZ | e6byhG1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
D [auth F] | F-box-like_1 | e6byhF1 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like_1 | ECOD (1.6) |
C [auth E] | F-box-like_1 | e6byhE1 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like_1 | ECOD (1.6) |
F [auth I] | F-box-like_1 | e6byhI1 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like_1 | ECOD (1.6) |
H [auth D] | ubiquitin_1 | e6byhD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
I [auth H] | ubiquitin_1 | e6byhH1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
G [auth C] | ubiquitin_1 | e6byhC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
B | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
E [auth G] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, E [auth G] | PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain |
A, B, E [auth G] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
C [auth E], D [auth F], F [auth I] | PF00646 | F-box domain (F-box) | F-box domain | This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07 ... | Domain |
G [auth C], H [auth D], I [auth H] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |