6BXJ
Structure of a single-chain beta3 integrin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EGF/Laminin-like | 8041568 | 3000412 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EGF/Laminin-like | 8041569 | 3000412 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Plexin repeat-like | 8042732 | 3000415 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Integrin domains | 8055552 | 3002062 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Integrin beta tail domain | 8041567 | 3000823 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | vWA-like | 8042676 | 3000832 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Integrin domains | 8055552 | 3002062 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | INB | e6bxjA5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: INB | ECOD (1.6) |
A | Integrin_B_tail | e6bxjA8 | A: a+b two layers | X: Integrin beta tail domain (From Topology) | H: Integrin beta tail domain (From Topology) | T: Integrin beta tail domain | F: Integrin_B_tail | ECOD (1.6) |
A | VWA | e6bxjA7 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: VWA | ECOD (1.6) |
A | PSI_integrin | e6bxjA4 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_integrin | ECOD (1.6) |
A | EGF_2 | e6bxjA2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_2 | ECOD (1.6) |
A | KOG1226_1st | e6bxjA1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: KOG1226_1st | ECOD (1.6) |
A | KOG1226_2nd | e6bxjA3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: KOG1226_2nd | ECOD (1.6) |
A | EGF_2_1 | e6bxjA6 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_2_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18372 | Integrin beta epidermal growth factor like domain 1 (I-EGF_1) | Integrin beta epidermal growth factor like domain 1 | This is the I-EGF 1 domain found in several integrin betas such as integrin beta 1-7. Structural analysis reveal an epidermal growth factor-like (I-EGF) domains 1 and 2 [1]. EGF1 lacks one disulfide (C2-C4) relative to the integrin EGF 2, 3, and 4 do ... | Domain | |
PF00092 | von Willebrand factor type A domain (VWA) | von Willebrand factor type A domain | - | Domain | |
PF17205 | Integrin plexin domain (PSI_integrin) | Integrin plexin domain | This short disulphide rich domain is found at the N-terminus of integrin beta chains. | Domain | |
PF00362 | Integrin beta chain VWA domain (Integrin_beta) | Integrin beta chain VWA domain | Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. | Domain | |
PF07974 | EGF-like domain (EGF_2) | EGF-like domain | This family contains EGF domains found in a variety of extracellular proteins. | Domain | |
PF07965 | Integrin beta tail domain (Integrin_B_tail) | Integrin beta tail domain | This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions. | Domain |