6BV8
Structure of proteinaceous RNase P 1 (PRORP1) from A. thaliana complexed with Mn after 3-hour soak with juglone
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6bv8a1 | All alpha proteins | alpha-alpha superhelix | TPR-like | Pentatricopeptide repeat (PPR) | Proteinaceous RNAse P1 (PRORP1) | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
A | d6bv8a3 | Alpha and beta proteins (a/b) | PIN domain-like | PIN domain-like | Protein-only RNAse P nuclease domain-like | Proteinaceous RNAse P1 (PRORP1) | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
A | d6bv8a2 | Small proteins | Protein-only RNAse P central domain-like | Protein-only RNAse P central domain-like | Protein-only RNAse P central domain-like | Proteinaceous RNAse P1 (PRORP1) | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17177 | e6bv8A2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF17177 | ECOD (1.6) |
A | PF16953 | e6bv8A1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF16953 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6bv8A3 | A: few secondary structure elements | X: Protein-only RNase P Zn-binding domain (From Topology) | H: Protein-only RNase P Zn-binding domain (From Topology) | T: Protein-only RNase P Zn-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
A | 3.40.50.11980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16953 | Protein-only RNase P (PRORP) | Protein-only RNase P | PRORPs (protein-only RNase P) are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes [1]. Arabidopsis thaliana contains PRORP enzymes (PRORP1, PRORP2 and PRORP3) where PRORP1 localizes to mitocho ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031595 | Protein-only RNase P, C-terminal | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR002885 | Pentatricopeptide repeat | Repeat | |
IPR033443 | PROP1-like, PPR domain | Domain |