6BN9
Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET70 PROTAC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Bromodomain | 8084245 | 3001843 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03178,PF10433 | e6bn9A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
A | PF10433 | e6bn9A3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
A | PF03178 | e6bn9A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
B | PF02190 | e6bn9B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF02190 | ECOD (1.6) |
B | PF03226 | e6bn9B2 | A: beta complex topology | X: ETN0001 domain-like (From Homology) | H: ETN0001 domain-like | T: Mss4-like | F: PF03226 | ECOD (1.6) |
C | PF00439 | e6bn9C1 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: PF00439 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
PF02190 | ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg) | ATP-dependent protease La (LON) substrate-binding domain | - | Family | |
PF03226 | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18) | Yippee zinc-binding/DNA-binding /Mis18, centromere assembly | This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ... | Domain | |
PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain |