6BKG
Human LigIV catalytic domain with bound DNA-adenylate intermediate in closed conformation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04679 | e6bkgA3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF04679 | ECOD (1.6) |
A | PF04675 | e6bkgA2 | A: alpha bundles | X: ATP-dependent DNA ligase DNA-binding domain (From Topology) | H: ATP-dependent DNA ligase DNA-binding domain (From Topology) | T: ATP-dependent DNA ligase DNA-binding domain | F: PF04675 | ECOD (1.6) |
A | PF01068 | e6bkgA4 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF01068 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04675 | DNA ligase N terminus (DNA_ligase_A_N) | DNA ligase N terminus | - | Family | |
PF01068 | ATP dependent DNA ligase domain (DNA_ligase_A_M) | ATP dependent DNA ligase domain | This domain belongs to a more diverse superfamily, including Pfam:PF01331 and Pfam:PF01653 [3]. | Domain | |
PF04679 | ATP dependent DNA ligase C terminal region (DNA_ligase_A_C) | ATP dependent DNA ligase C terminal region | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029710 | DNA ligase 4 | Family | |
IPR012310 | DNA ligase, ATP-dependent, central | Domain | |
IPR012308 | DNA ligase, ATP-dependent, N-terminal | Domain | |
IPR044125 | DNA Ligase 4, adenylation domain | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR021536 | DNA ligase IV domain | Domain | |
IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily | Homologous Superfamily | |
IPR001357 | BRCT domain | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily | |
IPR016059 | DNA ligase, ATP-dependent, conserved site | Conserved Site | |
IPR000977 | DNA ligase, ATP-dependent | Family | |
IPR012309 | DNA ligase, ATP-dependent, C-terminal | Domain |