6B58
FrdA-SdhE assembly intermediate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6b58b_ | All alpha proteins | YgfY-like | YgfY-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
D | d6b58d_ | All alpha proteins | YgfY-like | YgfY-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | L-aspartate oxidase C-terminal domain-like | 8056077 | 3000021 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Succinate dehydrogenase/fumarate reductase domain-like | 8056076 | 3000054 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Succinate dehydrogenase/fumarate reductase domain-like | 8056076 | 3000054 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | L-aspartate oxidase C-terminal domain-like | 8056077 | 3000021 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Succ_DH_flav_C | e6b58A1 | A: alpha bundles | X: Spectrin repeat-like | H: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | F: Succ_DH_flav_C | ECOD (1.6) |
A | FAD_binding_2 | e6b58A3 | A: a+b complex topology | X: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology) | H: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | F: FAD_binding_2 | ECOD (1.6) |
A | FAD_binding_3_1st | e6b58A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: FAD_binding_3_1st | ECOD (1.6) |
C | Succ_DH_flav_C | e6b58C2 | A: alpha bundles | X: Spectrin repeat-like | H: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | F: Succ_DH_flav_C | ECOD (1.6) |
C | FAD_binding_2 | e6b58C1 | A: a+b complex topology | X: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology) | H: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain | F: FAD_binding_2 | ECOD (1.6) |
C | FAD_binding_3_1st | e6b58C3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: FAD_binding_3_1st | ECOD (1.6) |
B | Sdh5 | e6b58B1 | A: alpha arrays | X: YgfY-like (DUP399, Pfam03937) (From Topology) | H: YgfY-like (DUP399, Pfam03937) (From Topology) | T: YgfY-like (DUP399, Pfam03937) | F: Sdh5 | ECOD (1.6) |
D | Sdh5 | e6b58D1 | A: alpha arrays | X: YgfY-like (DUP399, Pfam03937) (From Topology) | H: YgfY-like (DUP399, Pfam03937) (From Topology) | T: YgfY-like (DUP399, Pfam03937) | F: Sdh5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.150.250 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
D | 1.10.150.250 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02910 | Fumarate reductase flavoprotein C-term (Succ_DH_flav_C) | Fumarate reductase flavoprotein C-term | This family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases. | Domain | |
PF00890 | FAD binding domain (FAD_binding_2) | FAD binding domain | - | Family | |
PF03937 | Flavinator of succinate dehydrogenase (Sdh5) | Flavinator of succinate dehydrogenase | This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron trans ... | Domain |