6AMY
Crystal structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6amya_ | All beta proteins | Single-stranded left-handed beta-helix | Trimeric LpxA-like enzymes | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | (Acinetobacter baumannii ) [TaxId: 470 ], | SCOPe (2.08) |
B | d6amyb_ | All beta proteins | Single-stranded left-handed beta-helix | Trimeric LpxA-like enzymes | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | (Acinetobacter baumannii ) [TaxId: 470 ], | SCOPe (2.08) |
C | d6amyc_ | All beta proteins | Single-stranded left-handed beta-helix | Trimeric LpxA-like enzymes | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD | (Acinetobacter baumannii ) [TaxId: 470 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hexapep_2_1 | e6amyA1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
A | THDPS_N_2 | e6amyA2 | A: alpha arrays | X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain | F: THDPS_N_2 | ECOD (1.6) |
B | Hexapep_2_1 | e6amyB1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
B | THDPS_N_2 | e6amyB2 | A: alpha arrays | X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain | F: THDPS_N_2 | ECOD (1.6) |
C | Hexapep_2_1 | e6amyC2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
C | THDPS_N_2 | e6amyC1 | A: alpha arrays | X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology) | T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain | F: THDPS_N_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.166.10 | Mainly Alpha | Orthogonal Bundle | Tetrahydrodipicolinate-N-succinyltransferase | Chain A, domain 1 | CATH (4.3.0) |
A | 2.160.10.10 | Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14805 | Tetrahydrodipicolinate N-succinyltransferase N-terminal (THDPS_N_2) | Tetrahydrodipicolinate N-succinyltransferase N-terminal | This is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1]. | Domain | |
PF14602 | Hexapeptide repeat of succinyl-transferase (Hexapep_2) | Hexapeptide repeat of succinyl-transferase | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023180 | Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 | Domain | |
IPR011004 | Trimeric LpxA-like superfamily | Homologous Superfamily | |
IPR005664 | Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family | Family | |
IPR018357 | Hexapeptide transferase, conserved site | Conserved Site | |
IPR037133 | Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily | Homologous Superfamily | |
IPR001451 | Hexapeptide repeat | Repeat |