5ZYA
SF3b spliceosomal complex bound to E7107
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth D] | SCOP2B Superfamily | Triquetra zinc finger motif | 8051848 | 3002040 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8051197 | 3001694 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8052535 | 3001694 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | SF3b10 | e5zyaB1 | A: alpha arrays | X: RDS3 complex subunit 10 (From Topology) | H: RDS3 complex subunit 10 (From Topology) | T: RDS3 complex subunit 10 | F: SF3b10 | ECOD (1.6) |
B [auth C] | KOG0213 | e5zyaC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG0213 | ECOD (1.6) |
C [auth D] | PHF5 | e5zyaD1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PHD finger-like domain-containing protein 5A | F: PHF5 | ECOD (1.6) |
D [auth A] | CPSF_A_N | e5zyaA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
D [auth A] | MMS1_N_C | e5zyaA4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
D [auth A] | MMS1_N_N | e5zyaA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
D [auth A] | CPSF_A_C | e5zyaA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF22646 | PPP2R1A-like HEAT repeat (PPP2R1A-like_HEAT) | PPP2R1A-like HEAT repeat | - | Repeat |
C [auth D] | PF03660 | PHF5-like protein (PHF5) | PHF5-like protein | - | Family |
D [auth A] | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat |
D [auth A] | PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR017089 | Splicing factor 3B, subunit 5 | Family |
A [auth B] | IPR009846 | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | Family |
B [auth C] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
B [auth C] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
B [auth C] | IPR015016 | Splicing factor 3B subunit 1 | Domain |
B [auth C] | IPR038737 | Splicing factor 3B subunit 1-like | Family |
C [auth D] | IPR005345 | PHF5-like | Family |
D [auth A] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
D [auth A] | IPR018846 | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Domain |
D [auth A] | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
D [auth A] | IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain |
D [auth A] | IPR050358 | RSE1/DDB1/CFT1/CPSF1 | Family |