Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
Contact us
Toggle navigation
RCSB PDB
Deposit
Prepare Data
PDBx/mmCIF file
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Validation API
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
PDB-Dev
Help and Resources
Deposit FAQ
Validation FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
PDBx/mmCIF User Guide
Chemical Component Dictionary
Biologically Interesting Molecule Reference Dictionary (BIRD)
BioSync/Beamlines/Facilities
Related Tools
Search
Advanced Search
Sequence Similarity Search
Structure Similarity Search
Chemical Similarity Search
Chemical Sketch Tool
Browse by Annotations
New Entries
Unreleased Entries
PDB Statistics
Visualize
Mol* (MolStar)
Sequence Annotations Viewer
Genome View
Analyze
Pairwise Structure Alignment
Symmetry Resources in the PDB
Structure Quality
Grouping Structures
PDB Citation MeSH Network Explorer
PDB Statistics
EPPIC Biological Assemblies
External Data and Resources
Integrated Resources
Additional Resources
Download
Coordinates and Experimental Data
Sequences
Ligands
File Download Services
Web Services
Learn
Training Courses
Guide to PDB Data
Molecule of the Month
Educational Resources
Curricula
Browse
News
SciArt Galleries
Irving Geis
David Goodsell
About
Contact Us
About RCSB PDB
Vision and Mission
Citation, Usage, Privacy Policies, Logo
News
PDB History
PDB50
User Community
Publications
RCSB PDB Advisory Committee
Team Members
Diversity, Equity, Inclusion, and Access
Service Status
Documentation
General Help
3D Structures in the Protein Data Bank
Computed Structure Models (CSM)
Search and Browse
Basic Search
Advanced Search
Browse Annotations
Visualize and Analyze
Sequence Viewers
Pairwise Structure Alignment
Exploring a 3D Structure
Grouping Structures
Programmatic Access
Additional Resources
Software Supporters
Deposition Resources
FAQs
Glossary
Careers
COVID-19
226,262
Structures from the PDB
1,068,577
Computed Structure Models (CSM)
Navigation Tabs
Structure Summary
Structure
Annotations
Experiment
Sequence
Genome
Versions
Display Files
FASTA Sequence
mmCIF Format
mmCIF Format (Header)
PDB Format
PDB Format (Header)
Download Files
FASTA Sequence
PDBx/mmCIF Format
PDBx/mmCIF Format (gz)
BinaryCIF Format (gz)
PDB Format
PDB Format (gz)
PDBML/XML Format (gz)
Structure Factors (CIF)
Structure Factors (CIF - gz)
Validation Full PDF
Validation (XML - gz)
Validation (CIF - gz)
Validation 2fo-fc coefficients (CIF - gz)
Validation fo-fc coefficients (CIF - gz)
Biological Assembly 1 (CIF - gz)
Biological Assembly 1 (PDB - gz)
Data API
5ZWZ
Crystal structure of Arabidopsis thaliana AGDP1 AGD34
External Resource: Annotation
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
UNK_F_TYPE
e5zwzA2
A: beta barrels
X: SH3
H: SH3
T: SH3
F: UNK_F_TYPE
ECOD (1.6)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF05641
Agenet domain (Agenet)
Agenet domain
This domain is related to the TUDOR domain Pfam:PF00567 [1]. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins [1].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Agenet domain-containing protein
protein binding
binding
histone binding
methylated histone binding
modification-dependent protein binding
methylation-dependent protein binding
histone reader activity
chromatin-protein adaptor activity
protein-macromolecule adaptor activity
molecular adaptor activity
regulation of cellular process
cellular biosynthetic process
negative regulation of biological process
negative regulation of cellular metabolic process
cellular component organization
chromatin organization
DNA methylation-dependent heterochromatin formation
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
heterochromatin formation
regulation of cellular process
cellular biosynthetic process
negative regulation of biological process
negative regulation of cellular metabolic process
cellular component organization
chromatin organization
DNA methylation-dependent heterochromatin formation
negative regulation of cellular process
chromatin remodeling
cellular component organization or biogenesis
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of biological process
heterochromatin formation
epigenetic regulation of gene expression
cellular metabolic process
negative regulation of metabolic process
biological regulation
regulation of cellular metabolic process
regulation of macromolecule metabolic process
gene expression
macromolecule biosynthetic process
negative regulation of cellular biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
negative regulation of gene expression
constitutive heterochromatin formation
biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
negative regulation of gene expression, epigenetic
regulation of macromolecule biosynthetic process
metabolic process
cellular process
macromolecule metabolic process
regulation of metabolic process
Less
intracellular organelle
intracellular anatomical structure
organelle
intracellular non-membrane-bounded organelle
chromosome, centromeric region
chromosome
cellular anatomical entity
chromosomal region
non-membrane-bounded organelle
chromatin
heterochromatin
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR008395
Agenet-like domain
Domain
A
IPR014002
Agenet domain, plant type
Domain
About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy
Help
Contact Us
Documentation
Website FAQ
Glossary
Service Status
RCSB PDB (
citation
) is hosted by
RCSB PDB is a member of the
RCSB Partners
Nucleic Acid Knowledgebase
wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB