5ZKW
Crystal structure of DFA-IIIase from Arthrobacter chlorophenolicus A6 in complex with GF2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
C [auth D] | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Pectin lyase-like | 8097332 | 3001746 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e5zkwB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth C] | PF18835 | e5zkwC1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF18835 | ECOD (1.6) |
E | F_UNCLASSIFIED | e5zkwE1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF05048,PF18835 | e5zkwA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF05048,PF18835 | ECOD (1.6) |
C [auth D] | F_UNCLASSIFIED | e5zkwD1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF18835 | e5zkwF1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF18835 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
D [auth C] | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
E | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
C [auth D] | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
F | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05048 | Periplasmic copper-binding protein (NosD) (NosD) | Periplasmic copper-binding protein (NosD) | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
DFA-IIIase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007742 | Periplasmic copper-binding protein NosD, beta helix domain | Domain | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |