5ZBN
Structure of glycolate oxidase without FMN from Nicotiana benthamiana
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5zbna_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FMN-linked oxidoreductases | FMN-linked oxidoreductases | automated matches | (Nicotiana benthamiana ) [TaxId: 4100 ], | SCOPe (2.08) |
B | d5zbnb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FMN-linked oxidoreductases | FMN-linked oxidoreductases | automated matches | (Nicotiana benthamiana ) [TaxId: 4100 ], | SCOPe (2.08) |
C | d5zbnc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | FMN-linked oxidoreductases | FMN-linked oxidoreductases | automated matches | (Nicotiana benthamiana ) [TaxId: 4100 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IMPDH_1st_1 | e5zbnA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: IMPDH_1st_1 | ECOD (1.6) |
B | IMPDH_1st_1 | e5zbnB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: IMPDH_1st_1 | ECOD (1.6) |
C | IMPDH_1st_1 | e5zbnC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: IMPDH_1st_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01070 | FMN-dependent dehydrogenase (FMN_dh) | FMN-dependent dehydrogenase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012133 | Alpha-hydroxy acid dehydrogenase, FMN-dependent | Family | |
IPR008259 | FMN-dependent alpha-hydroxy acid dehydrogenase, active site | Active Site | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR037396 | FMN hydroxy acid dehydrogenase domain | Domain | |
IPR000262 | FMN-dependent dehydrogenase | Domain |