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Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base 5fC pair with dA External Resource: Annotation Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2B Superfamily Ribonuclease H-like 8044539 3000143 SCOP2B (2022-06-29) A SCOP2B Superfamily Nucleotide cyclase/DNA polymerase palm domain-like 8037492 3001272 SCOP2B (2022-06-29) A SCOP2B Superfamily Nucleotide cyclase/DNA polymerase palm domain-like 8037492 3001272 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF00476 e5z3nA3 A: alpha arrays X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I F: PF00476 ECOD (1.6) A PF00476 e5z3nA4 A: alpha bundles X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) T: fingers domain in bacteriophage RB69-like DNA polymerase I F: PF00476 ECOD (1.6) A PF00476 e5z3nA1 A: a+b two layers X: Alpha-beta plaits H: Adenylyl and guanylyl cyclase catalytic domain-like T: Adenylyl and guanylyl cyclase catalytic domain-like F: PF00476 ECOD (1.6) A PF09281 e5z3nA2 A: mixed a+b and a/b X: Ribonuclease H-like H: Ribonuclease H-like (From Topology) T: Ribonuclease H-like F: PF09281 ECOD (1.6)
Chains Polymer Molecular Function Biological Process Cellular Component DNA polymerase I, thermostable - DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') - - - DNA (5'-D(*AP*AP*AP*CP*GP*GP*CP*GP*CP*CP*GP*(5FC)P*GP*GP*TP*C)-3') - - -
Chains Accession Name Type IPR036397 Ribonuclease H superfamily Homologous Superfamily IPR002421 5'-3' exonuclease Domain IPR043502 DNA/RNA polymerase superfamily Homologous Superfamily IPR020045 DNA polymerase I-like, H3TH domain Domain IPR015361 Taq polymerase, thermostable, exonuclease region Domain IPR001098 DNA-directed DNA polymerase, family A, palm domain Domain IPR029060 PIN-like domain superfamily Homologous Superfamily IPR036279 5'-3' exonuclease, C-terminal domain superfamily Homologous Superfamily IPR008918 Helix-hairpin-helix motif, class 2 Conserved Site IPR002298 DNA polymerase A Family IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal Domain IPR019760 DNA-directed DNA polymerase, family A, conserved site Conserved Site IPR018320 DNA polymerase 1 Family IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Domain IPR012337 Ribonuclease H-like superfamily Homologous Superfamily