5Z00
AtVAL1 B3 domain in complex with 15bp-DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | DNA-binding pseudobarrel domain | 8089662 | 3000213 | SCOP2B (2022-06-29) |
I [auth K] | SCOP2B Superfamily | DNA-binding pseudobarrel domain | 8089662 | 3000213 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | DNA-binding pseudobarrel domain | 8089662 | 3000213 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | DNA-binding pseudobarrel domain | 8089662 | 3000213 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | B3 | e5z00C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
I [auth K] | B3 | e5z00K1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
F [auth G] | B3 | e5z00G1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
J [auth M] | B3 | e5z00M1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
I [auth K] | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
F [auth G] | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
J [auth M] | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C, F [auth G], I [auth K], J [auth M] | PF02362 | B3 DNA binding domain (B3) | B3 DNA binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C, F [auth G], I [auth K], J [auth M] | IPR015300 | DNA-binding pseudobarrel domain superfamily | Homologous Superfamily |
C, F [auth G], I [auth K], J [auth M] | IPR003340 | B3 DNA binding domain | Domain |
C, F [auth G], I [auth K], J [auth M] | IPR011124 | Zinc finger, CW-type | Domain |