Annotations: 5YVF

Crystal structure of BFA1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	WD40, Beta-prop_NOL10_N	e5yvfD1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F: WD40, Beta-prop_NOL10_N	ECOD (v295.2)
C	Collar,S_tail_recep_bd	e5yvfC1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295.2)
B	Collar,S_tail_recep_bd	e5yvfB1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295.2)
A	Collar,S_tail_recep_bd	e5yvfA1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12204	Domain of unknown function (DUF3598), N-terminal (DUF3598_N)	Domain of unknown function (DUF3598), N-terminal	This domain is predominantly found at the N-terminal end of proteins from cyanobacteria and plants, including Biogenesis factor required for ATP synthase 1 (BFA1, Swiss:F4J1U2) from Arabidopsis thaliana. BFA1 promotes the assembly of the CF1 subcompl ...	This domain is predominantly found at the N-terminal end of proteins from cyanobacteria and plants, including Biogenesis factor required for ATP synthase 1 (BFA1, Swiss:F4J1U2) from Arabidopsis thaliana. BFA1 promotes the assembly of the CF1 subcomplex of the chloroplast ATP synthase by specifically interacting with the gamma and beta subunits. This domain consists of nine beta-sheets and two alpha- helices forming an atypical beta-barrel, which locates perpendicularly to the typical beta-barrel formed by the C-terminal domain [1].	Domain
A, B, C, D	PF21053	Biogenesis factor required for ATP synthase 1, C-terminal domain (BFA1_C)	Biogenesis factor required for ATP synthase 1, C-terminal domain	This domain is predominantly found at the C-terminal end of proteins from cyanobacteria and plants, including Biogenesis factor required for ATP synthase 1 (BFA1, Swiss:F4J1U2) from Arabidopsis thaliana. BFA1 promotes the assembly of the CF1 subcompl ...	This domain is predominantly found at the C-terminal end of proteins from cyanobacteria and plants, including Biogenesis factor required for ATP synthase 1 (BFA1, Swiss:F4J1U2) from Arabidopsis thaliana. BFA1 promotes the assembly of the CF1 subcomplex of the chloroplast ATP synthase by specifically interacting with the gamma and beta subunits. This domain consists of ten beta-sheets and one alpha- helix forming a typical beta-barrel, which locates perpendicularly to Pfam:PF12204 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	BFA1	-	protein-containing complex organization cellular component organization cellular component biogenesis organelle organization cellular component assembly plastid organization proton-transporting ATP synthase complex assembly chloroplast organization proton-transporting two-sector ATPase complex assembly chloroplast proton-transporting ATP synthase complex assembly protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of biological process protein-containing complex organization cellular component organization cellular component biogenesis organelle organization cellular component assembly plastid organization proton-transporting ATP synthase complex assembly chloroplast organization proton-transporting two-sector ATPase complex assembly chloroplast proton-transporting ATP synthase complex assembly protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of biological process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization positive regulation of cellular component biogenesis biological regulation positive regulation of biological process regulation of cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly positive regulation of cellular process chloroplast fission organelle fission plastid fission	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast plastid stroma chloroplast stroma

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR022017	Biogenesis factor required for ATP synthase 1-like, DUF3598	Domain
A, B, C, D	IPR012674	Calycin superfamily	Homologous Superfamily
A, B, C, D	IPR048378	Biogenesis factor required for ATP synthase 1-like, C-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5YVF | pdb_00005yvf

Crystal structure of BFA1

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage