Annotations: 5YRQ

Crystal structure of Rad5 and Rev1

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5yrqA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F:	ECOD (v294.2)
B	DapB_N	e5yrqB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v294.2)
C [auth D]		e5yrqD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F:	ECOD (v294.2)
D [auth E]	DapB_N	e5yrqE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth E]	DNA repair protein RAD5,DNA repair protein REV1	deoxycytidyl transferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid DNA binding binding damaged DNA binding nucleic acid binding cation binding deoxycytidyl transferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid DNA binding binding damaged DNA binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding DNA secondary structure binding Y-form DNA binding ATP-dependent activity, acting on DNA ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding nucleic acid conformation isomerase activity four-way junction helicase activity isomerase activity DNA helicase activity helicase activity macromolecular conformation isomerase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides four-way junction DNA binding transition metal ion binding zinc ion binding single-stranded DNA binding	translesion synthesis cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process DNA damage tolerance macromolecule biosynthetic process nucleic acid metabolic process DNA synthesis involved in DNA replication nucleobase-containing compound metabolic process nucleic acid biosynthetic process DNA replication biosynthetic process cellular response to stress translesion synthesis cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process DNA damage tolerance macromolecule biosynthetic process nucleic acid metabolic process DNA synthesis involved in DNA replication nucleobase-containing compound metabolic process nucleic acid biosynthetic process DNA replication biosynthetic process cellular response to stress DNA damage response response to stress metabolic process cellular process error-prone translesion synthesis macromolecule metabolic process DNA biosynthetic process DNA repair error-free translesion synthesis protein polymerization protein-containing complex organization homeostatic process free ubiquitin chain polymerization cellular component organization cellular component biogenesis cellular component assembly cellular homeostasis protein-containing complex assembly cellular component organization or biogenesis ubiquitin recycling protein polyubiquitination protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal error-free postreplication DNA repair double-strand break repair	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle replication fork intracellular membraneless organelle chromosome chromatin nucleus membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membraneless organelle replication fork intracellular membraneless organelle chromosome chromatin nucleus chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth E]	IPR001126	UmuC domain	Domain
A, B, C [auth D], D [auth E]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR036775	DNA polymerase, Y-family, little finger domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR012112	DNA repair protein Rev1	Family
A, B, C [auth D], D [auth E]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR001357	BRCT domain	Domain
A, B, C [auth D], D [auth E]	IPR017961	DNA polymerase, Y-family, little finger domain	Domain
A, B, C [auth D], D [auth E]	IPR053848	DNA polymerase IV/DNA polymerase iota-like, thumb domain	Domain
A, B, C [auth D], D [auth E]	IPR036420	BRCT domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR049730	SNF2/RAD5-like, C-terminal helicase domain	Domain
A, B, C [auth D], D [auth E]	IPR014905	HIRAN domain	Domain
A, B, C [auth D], D [auth E]	IPR038718	SNF2-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR000330	SNF2, N-terminal domain	Domain
A, B, C [auth D], D [auth E]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR018957	Zinc finger, C3HC4 RING-type	Domain
A, B, C [auth D], D [auth E]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A, B, C [auth D], D [auth E]	IPR050628	SNF2_RAD54_helicase_TF	Unknown
A, B, C [auth D], D [auth E]	IPR001650	Helicase, C-terminal domain-like	Domain
A, B, C [auth D], D [auth E]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B, C [auth D], D [auth E]	IPR001841	Zinc finger, RING-type	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5YRQ | pdb_00005yrq

Crystal structure of Rad5 and Rev1

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage