5YJL
Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with NADPH and GBP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glutamyl tRNA-reductase dimerization domain | 8091375 | 3000027 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8091366 | 3001023 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Glutamyl tRNA-reductase coenzyme-binding domain-like | 8089294 | 3000056 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Glutamyl tRNA-reductase coenzyme-binding domain-like | 8089294 | 3000056 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Glutamyl tRNA-reductase dimerization domain | 8091375 | 3000027 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8091366 | 3001023 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00745 | e5yjlA1 | A: alpha duplicates or obligate multimers | X: Glutamyl tRNA-reductase dimerization domain (From Topology) | H: Glutamyl tRNA-reductase dimerization domain (From Topology) | T: Glutamyl tRNA-reductase dimerization domain | F: PF00745 | ECOD (1.6) |
A | PF05201 | e5yjlA2 | A: a+b two layers | X: Alpha-beta plaits | H: Glutamyl tRNA-reductase catalytic, N-terminal domain (From Topology) | T: Glutamyl tRNA-reductase catalytic, N-terminal domain | F: PF05201 | ECOD (1.6) |
A | PF01488 | e5yjlA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF01488 | ECOD (1.6) |
C [auth B] | PF00745 | e5yjlB1 | A: alpha duplicates or obligate multimers | X: Glutamyl tRNA-reductase dimerization domain (From Topology) | H: Glutamyl tRNA-reductase dimerization domain (From Topology) | T: Glutamyl tRNA-reductase dimerization domain | F: PF00745 | ECOD (1.6) |
C [auth B] | PF05201 | e5yjlB2 | A: a+b two layers | X: Alpha-beta plaits | H: Glutamyl tRNA-reductase catalytic, N-terminal domain (From Topology) | T: Glutamyl tRNA-reductase catalytic, N-terminal domain | F: PF05201 | ECOD (1.6) |
C [auth B] | PF01488 | e5yjlB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF01488 | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e5yjlC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth C] | PF10615 | e5yjlC1 | A: a+b two layers | X: a+b domain in heme oxygenase (From Topology) | H: a+b domain in heme oxygenase (From Topology) | T: a+b domain in heme oxygenase | F: PF10615 | ECOD (1.6) |
D | F_UNCLASSIFIED | e5yjlD2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF10615 | e5yjlD1 | A: a+b two layers | X: a+b domain in heme oxygenase (From Topology) | H: a+b domain in heme oxygenase (From Topology) | T: a+b domain in heme oxygenase | F: PF10615 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.460.30 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
C [auth B] | 3.30.460.30 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
C [auth B] | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B [auth C] | 2.30.110.10 | Mainly Beta | Roll | Pnp Oxidase | Chain A | CATH (4.3.0) |
B [auth C] | 3.20.180.10 | Alpha Beta | Alpha-Beta Barrel | Split barrel-like | PNP-oxidase-like | CATH (4.3.0) |
D | 2.30.110.10 | Mainly Beta | Roll | Pnp Oxidase | Chain A | CATH (4.3.0) |
D | 3.20.180.10 | Alpha Beta | Alpha-Beta Barrel | Split barrel-like | PNP-oxidase-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00745 | Glutamyl-tRNAGlu reductase, dimerisation domain (GlutR_dimer) | Glutamyl-tRNAGlu reductase, dimerisation domain | - | Domain |
A, C [auth B] | PF05201 | Glutamyl-tRNAGlu reductase, N-terminal domain (GlutR_N) | Glutamyl-tRNAGlu reductase, N-terminal domain | - | Domain |
A, C [auth B] | PF01488 | Shikimate / quinate 5-dehydrogenase (Shikimate_DH) | Shikimate / quinate 5-dehydrogenase | - | Family |
B [auth C], D | PF10615 | Domain of unknown function (DUF2470) (DUF2470) | Domain of unknown function (DUF2470) | This domain is found in a group of putative heme-iron utilisation proteins, such as HugZ. It can also be found in C-terminal of the glutamyl-tRNA reductase-binding (GluTRBP) protein from Arabidopsis [1]. GluTRBP is involved in the regulation of gluta ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR018214 | Glutamyl-tRNA reductase, conserved site | Conserved Site |
A, C [auth B] | IPR006151 | Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase | Domain |
A, C [auth B] | IPR015895 | Glutamyl-tRNA reductase, N-terminal | Domain |
A, C [auth B] | IPR000343 | Glutamyl-tRNA reductase | Family |
A, C [auth B] | IPR036453 | Glutamyl tRNA-reductase dimerization domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR036343 | Glutamyl-tRNA reductase, N-terminal domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR015896 | Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain | Domain |
B [auth C], D | IPR012349 | FMN-binding split barrel | Homologous Superfamily |
B [auth C], D | IPR019595 | Domain of unknown function DUF2470 | Domain |
B [auth C], D | IPR037119 | Haem oxygenase HugZ-like superfamily | Homologous Superfamily |