5Y7W
Crystal structure of the Nco-A1 PAS-B domain with YL-2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF14598 | e5y7wA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF14598 | ECOD (1.6) |
B | PF14598 | e5y7wB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF14598 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14598 | PAS domain (PAS_11) | PAS domain | This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6) [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010011 | Nuclear receptor coactivator, DUF1518 | Domain | |
IPR028819 | Nuclear receptor coactivator 1, basic helix-loop-helix | Domain | |
IPR009110 | Nuclear receptor coactivator, interlocking | Homologous Superfamily | |
IPR017426 | Nuclear receptor coactivator | Family | |
IPR014935 | Nuclear receptor coactivator, receptor-binding domain | Domain | |
IPR014920 | Nuclear receptor coactivator, Ncoa-type, interlocking | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR037077 | Nuclear receptor coactivator, Ncoa-type, interlocking domain superfamily | Homologous Superfamily | |
IPR013767 | PAS fold | Domain | |
IPR000014 | PAS domain | Domain | |
IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ALC | Parent Component: ALA | |
MK8 | Parent Component: LEU | |
NH2 | AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | :