Annotations: 5Y6U

Crystal structure of wild-type YabJ protein from Bacillus subtilis (natto).

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5y6uc_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
B	d5y6ub_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)
A	d5y6ua_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Bacillus subtilis subsp. natto BEST195 ) [TaxId: 645657 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Collar,S_tail_recep_bd	e5y6uC1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295.2)
B	Collar,S_tail_recep_bd	e5y6uB1	A: alpha arrays	X: L-aspartase middle domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Collar,S_tail_recep_bd	ECOD (v295.2)
A	PK_Tyr_Ser-Thr	e5y6uA1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F: PK_Tyr_Ser-Thr	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	YabJ protein	hydrolase activity deaminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR019897	RidA, conserved site	Conserved Site
A, B, C	IPR006056	RidA family	Family
A, B, C	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C	IPR006175	YjgF/YER057c/UK114 family	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.