5Y1Z
Crystal structure of ZMYND8 PHD-BROMO-PWWP tandem in complex with Drebrin ADF-H domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cofilin_ADF | e5y1zA1 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Cofilin_ADF | ECOD (1.6) |
B | Cofilin_ADF | e5y1zB1 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Cofilin_ADF | ECOD (1.6) |
C | PWWP | e5y1zC3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PWWP | ECOD (1.6) |
C | Bromodomain | e5y1zC1 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
C | PHD_5 | e5y1zC2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
D | PWWP | e5y1zD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PWWP | ECOD (1.6) |
D | Bromodomain | e5y1zD1 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
D | PHD_5 | e5y1zD3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.20.10 | Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin | CATH (4.3.0) |
B | 3.40.20.10 | Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00241 | Cofilin/tropomyosin-type actin-binding protein (Cofilin_ADF) | Cofilin/tropomyosin-type actin-binding protein | Severs actin filaments and binds to actin monomers. | Domain | |
PF00855 | PWWP domain (PWWP) | PWWP domain | The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif [1]. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic c ... | Domain | |
PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain | |
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029006 | ADF-H/Gelsolin-like domain superfamily | Homologous Superfamily | |
IPR002108 | Actin-depolymerising factor homology domain | Domain | |
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR001487 | Bromodomain | Domain | |
IPR000313 | PWWP domain | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR021931 | MYND-type zinc finger-containing chromatin reader ZMYND8 | Family | |
IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site | |
IPR002893 | Zinc finger, MYND-type | Domain | |
IPR044075 | PRKCBP1, PHD finger | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR036427 | Bromodomain-like superfamily | Homologous Superfamily | |
IPR037967 | ZMYND8, Bromo domain | Domain |