5XYU
Small subunit of Mycobacterium smegmatis ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth F] | SCOP2 Family | Ribosomal protein S6 | 8066502 | 4001337 | SCOP2 (2022-06-29) |
E [auth F] | SCOP2 Superfamily | Ribosomal protein S6 | 8066503 | 3001323 | SCOP2 (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Ribosomal protein S7 | 8077977 | 3000799 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Ribosomal protein S8 | 8079055 | 3000709 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082671 | 3000100 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | Ribosomal protein S10 | 8096980 | 3001336 | SCOP2B (2022-06-29) |
K [auth L] | SCOP2 Family | Cold shock DNA-binding domain-like | 8096977 | 4001909 | SCOP2 (2022-06-29) |
K [auth L] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8096978 | 3000135 | SCOP2 (2022-06-29) |
L [auth M] | SCOP2B Superfamily | S13-like H2TH domain | 8096982 | 3000053 | SCOP2B (2022-06-29) |
M [auth N] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8059256 | 3000068 | SCOP2B (2022-06-29) |
N [auth O] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8072634 | 4000767 | SCOP2 (2022-06-29) |
N [auth O] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8072635 | 3001284 | SCOP2 (2022-06-29) |
P [auth Q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059280 | 3000135 | SCOP2B (2022-06-29) |
R [auth S] | SCOP2B Superfamily | Ribosomal protein S19 | 8086054 | 3000686 | SCOP2B (2022-06-29) |
J [auth K] | SCOP2B Superfamily | Translational machinery components | 8096984 | 3000571 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | Ribosomal_S3_C | e5xyuC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
B [auth C] | KH_2_1 | e5xyuC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
C [auth D] | S4 | e5xyuD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
D [auth E] | Ribosomal_S5_C | e5xyuE1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
D [auth E] | Ribosomal_S5 | e5xyuE2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
E [auth F] | Ribosomal_S6 | e5xyuF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
F [auth G] | Ribosomal_S7_1 | e5xyuG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
G [auth H] | Ribosomal_S8_N | e5xyuH1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
G [auth H] | Ribosomal_S8_C | e5xyuH2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
H [auth I] | Ribosomal_S9 | e5xyuI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
I [auth J] | Ribosomal_S10 | e5xyuJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
K [auth L] | Ribosom_S12_S23 | e5xyuL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
L [auth M] | Ribosomal_S13_1 | e5xyuM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
M [auth N] | Ribosomal_S14 | e5xyuN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14 | ECOD (1.6) |
N [auth O] | Ribosomal_S15_1 | e5xyuO1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
O [auth P] | Ribosomal_S16_1 | e5xyuP1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16_1 | ECOD (1.6) |
P [auth Q] | Ribosomal_S17_1 | e5xyuQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
Q [auth R] | Ribosomal_S18 | e5xyuR1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
R [auth S] | Ribosomal_S19 | e5xyuS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
S [auth T] | Ribosomal_S20p | e5xyuT1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
J [auth K] | Ribosomal_S11 | e5xyuK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
B [auth C] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
C [auth D] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
C [auth D] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
D [auth E] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
D [auth E] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
E [auth F] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
G [auth H] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
H [auth I] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
I [auth J] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
K [auth L] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
L [auth M] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
M [auth N] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
N [auth O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
O [auth P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
P [auth Q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
J [auth K] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |