5XQG

Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum complexed with unsaturated galacturonosyl rhamnose

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e5xqgA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5xqgA3	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5xqgB2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5xqgB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5xqgC2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5xqgC3	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e5xqgE2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e5xqgE3	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
F	UNK_F_TYPE	e5xqgF3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
F	UNK_F_TYPE	e5xqgF1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e5xqgG3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e5xqgG1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
H	UNK_F_TYPE	e5xqgH2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
H	UNK_F_TYPE	e5xqgH1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e5xqgD3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e5xqgD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF21345	PcRGLX-like protein central beta sandwich domain (PcRGLX_2nd)	PcRGLX-like protein central beta sandwich domain	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, P ...	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, Proteobacteria and fungi. Proteins in this family are typically between 863 and 928 amino acids in length. This entry represents the central beta-sandwich domain. Members of this family share a 3 domain architecture [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF19501	PcRGLX-like N-terminal RIFT barrel domain (PcRGLX_1st)	PcRGLX-like N-terminal RIFT barrel domain	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, P ...	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, Proteobacteria and fungi. Proteins in this family are typically between 863 and 928 amino acids in length. This entry represents the N-terminal RIFT barrel like domain. Members of this family share a 3 domain architecture [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF21346	PcRGLX-like protein C-terminal alpha/alpha toroid domain (PcRGLX_3rd)	PcRGLX-like protein C-terminal alpha/alpha toroid domain	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, P ...	This family of proteins includes Exo-rhamnogalacturonan lyase from Penicillium chrysogenum 31B (PcRGLX). The family also includes YetA from B. subtilis is functionally uncharacterised. This family of proteins is found in Actinobacteria, Firmicutes, Proteobacteria and fungi. Proteins in this family are typically between 863 and 928 amino acids in length. This entry represents the C-terminal alpha/alpha-toroid domain. Members of this family share a 3 domain architecture [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Pcrglx protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR048331	PcRGLX/YetA-like protein C-terminal alpha/alpha toroid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR045793	PcRGLX/YetA-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR048330	PcRGLX/YetA-like, central beta-sandwich domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR048329	PcRGLX/YetA-like, N-terminal RIFT barrel domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.