5XLB
The structure of hemagglutinin Q226L-G228S mutant from an avian-origin H4N6 influenza virus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5xlba_ | All beta proteins | Viral protein domain | Viral protein domain | automated matches | automated matches | (Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) ) [TaxId: 385590 ], | SCOPe (2.08) |
C [auth B] | d5xlbb_ | All beta proteins | Viral protein domain | Viral protein domain | automated matches | automated matches | (Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) ) [TaxId: 385590 ], | SCOPe (2.08) |
B [auth C] | d5xlbc_ | Coiled coil proteins | Stalk segment of viral fusion proteins | Influenza hemagglutinin (stalk) | Influenza hemagglutinin (stalk) | Influenza hemagglutinin (stalk) | (Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) ) [TaxId: 385590 ], | SCOPe (2.08) |
D | d5xlbd_ | Coiled coil proteins | Stalk segment of viral fusion proteins | Influenza hemagglutinin (stalk) | Influenza hemagglutinin (stalk) | Influenza hemagglutinin (stalk) | (Influenza A virus (A/duck/Czechoslovakia/1956(H4N6)) ) [TaxId: 385590 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087810 | 3001342 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087810 | 3001342 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088042 | 3001616 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088042 | 3001616 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00509 | e5xlbA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
C [auth B] | PF00509 | e5xlbB1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00509 | ECOD (1.6) |
B [auth C] | PF00509 | e5xlbC1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
D | PF00509 | e5xlbD1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: PF00509 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.209.20 | Alpha Beta | Alpha-Beta Complex | Hemagglutinin (Ha1 Chain) | Chain: A | CATH (4.3.0) |
C [auth B] | 3.90.209.20 | Alpha Beta | Alpha-Beta Complex | Hemagglutinin (Ha1 Chain) | Chain: A | CATH (4.3.0) |
B [auth C] | 3.90.20.10 | Alpha Beta | Alpha-Beta Complex | Hemagglutinin Ectodomain | Chain B | CATH (4.3.0) |
D | 3.90.20.10 | Alpha Beta | Alpha-Beta Complex | Hemagglutinin Ectodomain | Chain B | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
B [auth C], D | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A, C [auth B] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A, C [auth B] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A, C [auth B] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
B [auth C], D | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
B [auth C], D | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
B [auth C], D | IPR000149 | Haemagglutinin, influenzavirus A | Family |
B [auth C], D | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |