5WXH
Crystal structure of TAF3 PHD finger bound to H3K4me3
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PHD | e5wxhA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD | ECOD (1.6) |
B [auth C] | PHD | e5wxhC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
B [auth C] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR009072 | Histone-fold | Homologous Superfamily |
A, B [auth C] | IPR001965 | Zinc finger, PHD-type | Domain |
A, B [auth C] | IPR006565 | Bromodomain associated domain | Domain |
A, B [auth C] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A, B [auth C] | IPR019787 | Zinc finger, PHD-finger | Domain |
A, B [auth C] | IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
A, B [auth C] | IPR019786 | Zinc finger, PHD-type, conserved site | Conserved Site |
C [auth D], D [auth P] | IPR009072 | Histone-fold | Homologous Superfamily |
C [auth D], D [auth P] | IPR007125 | Histone H2A/H2B/H3 | Domain |
C [auth D], D [auth P] | IPR000164 | Histone H3/CENP-A | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth D], D [auth P] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |