5WTL
Crystal structure of the periplasmic portion of outer membrane protein A (OmpA) from Capnocytophaga gingivalis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | OmpA-like | 8075224 | 3001650 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | OmpA-like | 8075224 | 3001650 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | OmpA-like | 8075224 | 3001650 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | OmpA-like | 8075224 | 3001650 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00691 | e5wtlA2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
A | PF02412 | e5wtlA1 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: PF02412 | ECOD (1.6) |
B | PF00691 | e5wtlB2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
B | PF02412 | e5wtlB1 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: PF02412 | ECOD (1.6) |
C | PF00691 | e5wtlC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
C | PF02412 | e5wtlC2 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: PF02412 | ECOD (1.6) |
D | PF00691 | e5wtlD1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
D | PF02412 | e5wtlD2 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: PF02412 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00691 | OmpA family (OmpA) | OmpA family | - | Family | |
PF02412 | Thrombospondin type 3 repeat (TSP_3) | Thrombospondin type 3 repeat | The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats [1]. The repeat lacks defined secondary structure [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
OmpA family protein |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006664 | Outer membrane protein, bacterial | Domain | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR003367 | Thrombospondin, type 3-like repeat | Repeat | |
IPR050330 | Bacterial Outer Membrane Structural/Functional | Family | |
IPR028974 | TSP type-3 repeat | Homologous Superfamily | |
IPR036737 | OmpA-like domain superfamily | Homologous Superfamily | |
IPR011250 | Outer membrane protein/outer membrane enzyme PagP, beta-barrel | Homologous Superfamily | |
IPR006665 | OmpA-like domain | Domain | |
IPR027385 | Outer membrane protein beta-barrel domain | Domain |