5WP9

Structural Basis of Mitochondrial Receptor Binding and Constriction by Dynamin-Related Protein 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyDynamin stalk-like 8054358 3002023 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRas-like P-loop GTPases 8054357 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADynamin_Me5wp9A1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
ADynamin_Ne5wp9A2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
CDynamin_Me5wp9C2 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
CDynamin_Ne5wp9C1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
EDynamin_Me5wp9E1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
EDynamin_Ne5wp9E2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
GDynamin_Me5wp9G1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
GDynamin_Ne5wp9G2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
IDynamin_Me5wp9I1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
IDynamin_Ne5wp9I2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
KDynamin_Me5wp9K1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
KDynamin_Ne5wp9K2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
MDynamin_Me5wp9M2 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
MDynamin_Ne5wp9M1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
ODynamin_Me5wp9O1 A: alpha bundlesX: Middle and GTPase effector domains in dynamin-related proteins (From Topology)H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)T: Middle and GTPase effector domains in dynamin-related proteinsF: Dynamin_MECOD (1.6)
ODynamin_Ne5wp9O2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Dynamin_NECOD (1.6)
DMab-21_Ce5wp9D1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
DMab-21_N_1e5wp9D2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
FMab-21_Ce5wp9F2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
FMab-21_N_1e5wp9F1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
HMab-21_Ce5wp9H2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
HMab-21_N_1e5wp9H1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
JMab-21_Ce5wp9J2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
JMab-21_N_1e5wp9J1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
LMab-21_Ce5wp9L2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
LMab-21_N_1e5wp9L1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
NMab-21_Ce5wp9N1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
NMab-21_N_1e5wp9N2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
BMab-21_Ce5wp9B2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
BMab-21_N_1e5wp9B1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)
PMab-21_Ce5wp9P2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Mab-21_CECOD (1.6)
PMab-21_N_1e5wp9P1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Mab-21_N_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF01031Dynamin central region (Dynamin_M)Dynamin central region- Family
A, C, E, G, I
PF00350Dynamin family (Dynamin_N)Dynamin family- Domain
A, C, E, G, I
PF02212Dynamin GTPase effector domain (GED)Dynamin GTPase effector domain- Family
B, D, F, H, J
PF20266Mab-21 protein HhH/H2TH-like domain (Mab-21_C)Mab-21 protein HhH/H2TH-like domainThis family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development [2-3].Domain
B, D, F, H, J
PF21297Mitochondrial dynamics protein MID51-like, C-terminal domain (MID51-like_C)Mitochondrial dynamics protein MID51-like, C-terminal domainThis domain is found in Mitochondrial dynamics protein MID51 from humans and similar proteins predominantly found in vertebrates. MID51 promotes the recruitment and association of the fission mediator dynamin-related protein 1 (DNM1L) to the mitochon ...This domain is found in Mitochondrial dynamics protein MID51 from humans and similar proteins predominantly found in vertebrates. MID51 promotes the recruitment and association of the fission mediator dynamin-related protein 1 (DNM1L) to the mitochondrial surface to drive mitochondrial fission. This entry represents the C-terminal domain of this protein, which adopts a nucleotidyltransferase fold with a mixed alpha-beta topology configured into two lobes separated by a deep cleft [1-4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
Dynamin-1-like protein
B, D, F, H, J
Mitochondrial dynamics protein MID49-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, I
IPR020850GTPase effector domainDomain
A, C, E, G, I
IPR001401Dynamin, GTPase domainDomain
A, C, E, G, I
IPR045063Dynamin, N-terminalDomain
A, C, E, G, I
IPR019762Dynamin, GTPase region, conserved siteConserved Site
A, C, E, G, I
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, C, E, G, I
IPR030381Dynamin-type guanine nucleotide-binding (G) domainDomain
A, C, E, G, I
IPR003130Dynamin GTPase effectorDomain
A, C, E, G, I
IPR000375Dynamin stalk domainDomain
A, C, E, G, I
IPR022812DynaminFamily
B, D, F, H, J
IPR024810MAB21L/Cyclic GMP-AMP synthase-like receptorFamily
B, D, F, H, J
IPR045909Mitochondrial dynamics protein MID49/MID51Family
B, D, F, H, J
IPR046906Mab-21-like, HhH/H2TH-like domainDomain
B, D, F, H, J
IPR049097Mitochondrial dynamics protein MID51-like, C-terminal domainDomain