5WED
Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.15A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF07992 | e5wedB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
B [auth A] | PF07992 | e5wedA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
C | PF07992 | e5wedC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
D | PF07992 | e5wedD2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.50.50.100 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | CATH (4.3.0) | |
B [auth A] | 3.50.50.100 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | CATH (4.3.0) | |
C | 3.50.50.100 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | CATH (4.3.0) | |
D | 3.50.50.100 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF07992 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D | IPR023753 | FAD/NAD(P)-binding domain | Domain |
A [auth B], B [auth A], C, D | IPR051169 | NADH:quinone oxidoreductase/NAD(P)H-quinone oxidoreductase | Family |
A [auth B], B [auth A], C, D | IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily |