5W5D
Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5w5db_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | automated matches | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
C | d5w5dc_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Synaptosomal-associated protein SNAP-25 | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
D | d5w5dd_ | Coiled coil proteins | Parallel coiled-coil | SNARE fusion complex | SNARE fusion complex | Synaptosomal-associated protein SNAP-25 | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
F | d5w5df_ | All beta proteins | C2 domain-like | C2 domain (Calcium/lipid-binding domain, CaLB) | Synaptotagmin-like (S variant) | Synaptogamin I | Rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | SNARE fusion complex | 8043665 | 3001549 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SNARE fusion complex | 8043667 | 3001549 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | SNARE fusion complex | 8040323 | 3001549 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | C2 domain (calcium/lipid-binding domain, calb) | 8040954 | 3000965 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Synaptobrevin | e5w5dA1 | A: extended segments | X: Synaptobrevin (From Topology) | H: Synaptobrevin (From Topology) | T: Synaptobrevin | F: Synaptobrevin | ECOD (1.6) |
F | C2_2 | e5w5dF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: C2 domain (From Topology) | T: C2 domain | F: C2_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 1.20.5.110 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
F | 2.60.40.150 | Mainly Beta | Sandwich | Immunoglobulin-like | C2 domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05739 | SNARE domain (SNARE) | SNARE domain | - | Family | |
PF00168 | C2 domain (C2) | C2 domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016444 | Synaptobrevin/Vesicle-associated membrane protein | Family | |
IPR042855 | v-SNARE, coiled-coil homology domain | Domain | |
IPR001388 | Synaptobrevin-like | Family | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR006012 | Syntaxin/epimorphin, conserved site | Conserved Site | |
IPR010989 | SNARE | Homologous Superfamily | |
IPR006011 | Syntaxin, N-terminal domain | Domain | |
IPR045242 | Syntaxin | Family | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR039077 | SNAP25, N-terminal SNARE motif, chordates | Domain | |
IPR000928 | SNAP-25 domain | Domain | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR039077 | SNAP25, N-terminal SNARE motif, chordates | Domain | |
IPR000928 | SNAP-25 domain | Domain | |
IPR008849 | Synaphin | Family | |
IPR000008 | C2 domain | Domain | |
IPR001565 | Synaptotagmin | Domain | |
IPR035892 | C2 domain superfamily | Homologous Superfamily |