5VZM
Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5vzma_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00240 | e5vzmA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
B | PF14377 | e5vzmB1 | A: extended segments | X: Ubiquitin-binding motif (UBM) (From Topology) | H: Ubiquitin-binding motif (UBM) (From Topology) | T: Ubiquitin-binding motif (UBM) | F: PF14377 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
PF14377 | Ubiquitin binding region (UBM) | Ubiquitin binding region | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR047346 | DNA repair protein REV1, ubiquitin-binding motif 1/2 | Conserved Site | |
IPR031991 | DNA repair protein Rev1, C-terminal | Domain | |
IPR001126 | UmuC domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR036775 | DNA polymerase, Y-family, little finger domain superfamily | Homologous Superfamily | |
IPR012112 | DNA repair protein Rev1 | Family | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR025527 | HUWE1/REV1, ubiquitin-binding motif | Conserved Site | |
IPR038401 | Rev1, C-terminal domain superfamily | Homologous Superfamily | |
IPR001357 | BRCT domain | Domain | |
IPR017961 | DNA polymerase, Y-family, little finger domain | Domain | |
IPR036420 | BRCT domain superfamily | Homologous Superfamily |