Annotations: 5VWK

Crystal structure of human Scribble PDZ1:Beta-PIX complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CSM2	e5vwkD1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: CSM2	ECOD (v295.2)
C	CSM2	e5vwkC1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: CSM2	ECOD (v295.2)
B	CSM2	e5vwkB1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: CSM2	ECOD (v295.2)
A	CSM2	e5vwkA1	A: alpha arrays	X: PH domain-like	H: second barrel domain in viral glycoproteins	T: second barrel domain in viral glycoproteins	F: CSM2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
C	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
B	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Beta-PIX	-	-	-
A, B, C, D	Protein scribble homolog	cell adhesion molecule binding cadherin binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity kinase binding enzyme binding protein kinase binding	cell population proliferation cellular process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process cell population proliferation cellular process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process positive chemotaxis chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion developmental process multicellular organismal process epithelium development tube development mammary gland morphogenesis mammary gland development gland development animal organ development morphogenesis of an epithelium tissue development mammary gland duct morphogenesis tissue morphogenesis anatomical structure morphogenesis multicellular organism development tube morphogenesis gland morphogenesis mammary gland epithelium development anatomical structure development animal organ morphogenesis epithelial tube morphogenesis animal gross anatomical part developmental process cell migration cell motility embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation primary neural tube formation embryo development ending in birth or egg hatching system development morphogenesis of embryonic epithelium neural tube development embryonic morphogenesis nervous system development neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane apoptotic process involved in development apoptotic process involved in morphogenesis synaptic vesicle endocytosis import into cell transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling establishment of localization in cell endocytosis negative regulation of lymphocyte proliferation regulation of leukocyte activation negative regulation of biological process regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation regulation of activated T cell proliferation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation activated T cell proliferation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of activated T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation polarized epithelial cell differentiation cellular developmental process epithelial cell differentiation morphogenesis of a polarized epithelium cell differentiation vesicle localization synaptic vesicle clustering organelle localization synaptic vesicle localization regulation of signaling signaling regulation of receptor recycling regulation of macromolecule metabolic process receptor recycling positive regulation of metabolic process receptor metabolic process positive regulation of receptor recycling positive regulation of macromolecule metabolic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of signaling establishment of cell polarity establishment or maintenance of bipolar cell polarity establishment of monopolar cell polarity establishment or maintenance of monopolar cell polarity establishment of apical/basal cell polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity activation of GTPase activity positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity protein localization to cell junction protein localization to adherens junction protein localization to cell-cell junction establishment of lymphocyte polarity establishment of T cell polarity multicellular organismal-level homeostasis epithelial structure maintenance homeostatic process anatomical structure homeostasis tissue homeostasis establishment of protein localization protein localization to synapse neurotransmitter receptor transport to postsynaptic membrane establishment of protein localization to plasma membrane establishment of protein localization to postsynaptic membrane endocytic recycling neurotransmitter receptor transport to plasma membrane neurotransmitter receptor transport, endosome to plasma membrane regulation of biological quality neurotransmitter receptor transport, endosome to postsynaptic membrane protein localization to cell periphery protein localization to postsynaptic membrane neurotransmitter receptor transport establishment of protein localization to membrane protein localization to plasma membrane intracellular transport protein-containing complex localization endosomal transport vesicle-mediated transport to the plasma membrane endosome to plasma membrane protein transport regulation of postsynaptic membrane neurotransmitter receptor levels protein transport protein localization to postsynapse receptor localization to synapse intracellular protein transport regulation of type II interferon production type II interferon production positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process gene expression macromolecule biosynthetic process positive regulation of type II interferon production regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production establishment or maintenance of epithelial cell apical/basal polarity negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle cell cycle regulation of cell cycle	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction myelin sheath abaxonal region myelin sheath extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction myelin sheath abaxonal region myelin sheath extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region basolateral plasma membrane Scrib-APC-beta-catenin complex protein-containing complex intracellular anatomical structure cytoplasm adherens junction postsynapse synapse presynapse cell-cell contact zone nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen immunological synapse postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001611	Leucine-rich repeat	Repeat
A, B, C, D	IPR050614	Synaptic Scaffolding LAP/MAGUK Families	Family
A, B, C, D	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
A, B, C, D	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B, C, D	IPR036034	PDZ superfamily	Homologous Superfamily
A, B, C, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: Q14160	neural tube defects, susceptibility to astrocytic tumor lung cancer ovarian cancer spina bifida intellectual disability malignant ependymoma pancreatic ductal adenocarcinoma tuberculosis lung adenocarcinoma psoriasis