5VE3
Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Lactamase_B_2 | e5ve3B1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B_2 | ECOD (1.6) |
A [auth B] | Rhodanese | e5ve3B2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Rhodanese/Cell cycle control phosphatase | F: Rhodanese | ECOD (1.6) |
B [auth A] | Lactamase_B_2 | e5ve3A2 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B_2 | ECOD (1.6) |
B [auth A] | Rhodanese | e5ve3A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavoproteins/Phosphotyrosine protein phosphatases-like | T: Rhodanese/Cell cycle control phosphatase | F: Rhodanese | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
A [auth B] | 3.40.250.10 | Alpha Beta | 3-Layer(aba) Sandwich | Oxidized Rhodanese | domain 1 | CATH (4.3.0) |
B [auth A] | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
B [auth A] | 3.40.250.10 | Alpha Beta | 3-Layer(aba) Sandwich | Oxidized Rhodanese | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF00581 | Rhodanese-like domain (Rhodanese) | Rhodanese-like domain | Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. | Domain |
A [auth B], B [auth A] | PF00753 | Metallo-beta-lactamase superfamily (Lactamase_B) | Metallo-beta-lactamase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR001763 | Rhodanese-like domain | Domain |
A [auth B], B [auth A] | IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily |
A [auth B], B [auth A] | IPR036873 | Rhodanese-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR001279 | Metallo-beta-lactamase | Domain |
A [auth B], B [auth A] | IPR051682 | Mitochondrial Persulfide Dioxygenase | Family |
A [auth B], B [auth A] | IPR044528 | Persulfide dioxygenase-like, MBL-fold metallo-hydrolase domain | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth B], B [auth A] | CSS | Parent Component: CYS :  AA0269 :  L-cysteine persulfide MOD:00274 |