5V6Y
Crystal structure of the human CLR:RAMP1 extracellular domain heterodimer with bound high-affinity and altered selectivity adrenomedullin variant
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RAMP | e5v6yA3 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: RAMP | ECOD (1.6) |
A | SBP_bac_1_C,SBP_bac_1_N_2 | e5v6yA4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C,SBP_bac_1_N_2 | ECOD (1.6) |
A | HRM | e5v6yA2 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: HRM | ECOD (1.6) |
B | RAMP | e5v6yB3 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: RAMP | ECOD (1.6) |
B | SBP_bac_1_C,SBP_bac_1_N_2 | e5v6yB4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C,SBP_bac_1_N_2 | ECOD (1.6) |
B | HRM | e5v6yB1 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: HRM | ECOD (1.6) |
C | RAMP | e5v6yC3 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: RAMP | ECOD (1.6) |
C | SBP_bac_1_C,SBP_bac_1_N_2 | e5v6yC4 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C,SBP_bac_1_N_2 | ECOD (1.6) |
C | HRM | e5v6yC2 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: HRM | ECOD (1.6) |
D | RAMP | e5v6yD2 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: RAMP | ECOD (1.6) |
D | SBP_bac_1_C,SBP_bac_1_N_2 | e5v6yD3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C,SBP_bac_1_N_2 | ECOD (1.6) |
D | HRM | e5v6yD1 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: HRM | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF04901 | Receptor activity modifying family (RAMP) | Receptor activity modifying family | - | Family | |
PF02793 | Hormone receptor domain (HRM) | Hormone receptor domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
NH2 | AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | :