Annotations: 5V3G

PRDM9-allele-C ZnF8-13

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth D]	SCOP2B Superfamily	beta-beta-alpha zinc fingers	8064790	3001077	SCOP2B (2022-06-29)
F [auth A]	SCOP2B Superfamily	beta-beta-alpha zinc fingers	8064790	3001077	SCOP2B (2022-06-29)
G	SCOP2 Family	Classic zinc finger, C2H2	8064789	4003583	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	beta-beta-alpha zinc fingers	8064790	3001077	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	Peptidase_S31	e5v3gD1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Peptidase_S31	ECOD (v294.2)
F [auth A]	Peptidase_S31	e5v3gA1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Peptidase_S31	ECOD (v294.2)
G	Peptidase_S31	e5v3gG1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Peptidase_S31	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], D [auth B]	DNA (5'-D(TPGPAPCPCPCPCPAPGPTPGPAPGPCPGPTPTPGPCPCP*C)-3')	-	-	-
B [auth F], E [auth C]	DNA (5'-D(APGPGPGPCPAPAPCPGPCPTPCPAPCPTPGPGPGPGPTP*C)-3')	-	-	-
C [auth D], F [auth A], G	PR domain zinc finger protein 9	transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding sequence-specific DNA binding DNA binding nucleic acid binding	methylation metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process methylation metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth D], F [auth A], G	IPR013087	Zinc finger C2H2-type	Domain
C [auth D], F [auth A], G	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.