5UM6
Crystal Structure of S. pombe Uba1 in a closed conformation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8052354 | 3000140 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8052351 | 3000112 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | SCCH domain-like | 8052355 | 3000139 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8052356 | 3000112 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8052356 | 3000112 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | FCCH domain-like | 8052344 | 3000138 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8052351 | 3000112 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | E2 binding domain-like | 8052338 | 3000147 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16190 | e5um6A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF16190 | ECOD (1.6) |
A | PF09358 | e5um6A1 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: PF09358 | ECOD (1.6) |
A | PF10585 | e5um6A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: PF10585 | ECOD (1.6) |
A | PF16191 | e5um6A4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: PF16191 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.30.180 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 1.10.10.2660 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Ubiquitin-activating enzyme E1, SCCH domain | CATH (4.3.0) |
A | 3.10.290.60 | Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00899 | ThiF family (ThiF) | ThiF family | This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3]. | Domain | |
PF09358 | Ubiquitin fold domain (E1_UFD) | Ubiquitin fold domain | The ubiquitin fold domain is found at the C-terminus of ubiquitin-activating E1 family enzymes. This domain binds to E2 enzymes [1]. | Domain | |
PF10585 | Ubiquitin-activating enzyme, SCCH domain (UBA_E1_SCCH) | Ubiquitin-activating enzyme, SCCH domain | Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free A ... | Domain | |
PF16190 | Ubiquitin-activating enzyme E1 FCCH domain (E1_FCCH) | Ubiquitin-activating enzyme E1 FCCH domain | This domain is found in the ubiquitin-activating E1 family enzymes [1]. | Domain | |
PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle (E1_4HB) | Ubiquitin-activating enzyme E1 four-helix bundle | This domain is found in the ubiquitin-activating E1 family enzymes [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042302 | Ubiquitin-activating enzyme E1, FCCH domain superfamily | Homologous Superfamily | |
IPR000011 | Ubiquitin/SUMO-activating enzyme E1-like | Family | |
IPR045886 | ThiF/MoeB/HesA family | Family | |
IPR042449 | Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1 | Homologous Superfamily | |
IPR019572 | Ubiquitin-activating enzyme, SCCH domain | Domain | |
IPR042063 | Ubiquitin-activating enzyme E1, SCCH domain | Homologous Superfamily | |
IPR000594 | THIF-type NAD/FAD binding fold | Domain | |
IPR032420 | Ubiquitin-activating enzyme E1, four-helix bundle | Domain | |
IPR018075 | Ubiquitin-activating enzyme E1 | Family | |
IPR032418 | Ubiquitin-activating enzyme E1, FCCH domain | Domain | |
IPR018965 | Ubiquitin-activating enzyme E1, C-terminal | Domain | |
IPR035985 | Ubiquitin-activating enzyme | Homologous Superfamily | |
IPR033127 | Ubiquitin-activating enzyme E1, Cys active site | Active Site | |
IPR038252 | Ubiquitin-activating enzyme E1, C-terminal domain superfamily | Homologous Superfamily |