5TPM
2.8 Angstrom Crystal Structure of the C-terminal Dimerization Domain of Transcriptional Regulator PdhR from Escherichia coli.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FCD | e5tpmA1 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
B | FCD | e5tpmB1 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
C | FCD | e5tpmC1 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
D | FCD | e5tpmD1 | A: alpha bundles | X: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | H: Fatty acid responsive transcription factor FadR, C-terminal domain (From Topology) | T: Fatty acid responsive transcription factor FadR, C-terminal domain | F: FCD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.20.120.530 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | GntR ligand-binding domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07729 | FCD domain (FCD) | FCD domain | This domain is the C-terminal ligand binding domain of many members of the GntR family. This domain binds to a range of effector molecules, including Lactate, Zn(II), Ni(II), Ca(II), Mg(II), citrate, sugar acids, sialic acid and N-acetylglucosamine-6 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR008920 | Transcription regulator FadR/GntR, C-terminal | Homologous Superfamily | |
IPR000524 | Transcription regulator HTH, GntR | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR011711 | GntR, C-terminal | Domain |