5TJ4 | pdb_00005tj4

Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CagX	e5tj4A1	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
A	Ldh_1_C	e5tj4A2	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
B	Ribosomal_L19	e5tj4B2	A: beta barrels	X: Repetitive alpha hairpins	H: ferredoxin-like domain in periplasmic region of MacB	T: SH3	F: Ribosomal_L19	ECOD (v294.2)
B	Ldh_1_C	e5tj4B3	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
C	CagX	e5tj4C2	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
C	Ldh_1_C	e5tj4C3	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
D	CagX	e5tj4D1	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
D	Ldh_1_C	e5tj4D2	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
E	CagX	e5tj4E2	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
E	Ldh_1_C	e5tj4E3	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
F	CagX	e5tj4F2	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
F	Ldh_1_C	e5tj4F3	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
G	CagX	e5tj4G1	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
G	Ldh_1_C	e5tj4G2	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
H	CagX	e5tj4H2	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
H	Ldh_1_C	e5tj4H3	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
I	CagX	e5tj4I1	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
I	Ldh_1_C	e5tj4I2	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
J	CagX	e5tj4J1	A: beta barrels	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: CagX	ECOD (v294.2)
J	Ldh_1_C	e5tj4J2	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF17708	Gasdermin PUB domain (Gasdermin_C)	Gasdermin PUB domain	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ...	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resistance in melanoma cells [2]. This family also includes the gasdermin protein [3]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein	ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity ion binding binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity phosphatidylinositol-4-phosphate binding phosphatidylglycerol binding cardiolipin binding modified amino acid binding phosphatidylserine binding	response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing response to other organism response to external stimulus defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to external biotic stimulus	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR040460	Gasdermin, pore forming domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR041263	Gasdermin, PUB domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR007677	Gasdermin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	: Q8TAX9	ulcerative colitis Crohn disease asthma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis systemic sclerosis acute lymphoblastic leukemia atrial fibrillation large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma rheumatoid arthritis allergic rhinitis ulcerative colitis Crohn disease asthma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis systemic sclerosis acute lymphoblastic leukemia atrial fibrillation large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma rheumatoid arthritis allergic rhinitis atypical teratoid rhabdoid tumor esophageal adenocarcinoma lung adenocarcinoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primary biliary cholangitis systemic lupus erythematosus cervical cancer glioblastoma lung carcinoma Malignant neoplasm of breast pancreatic ductal adenocarcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.