5TD8
Crystal structure of an Extended Dwarf Ndc80 Complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Calponin-homology domain CH-domain | 8051981 | 3000264 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Calponin-homology domain CH-domain | 8053600 | 3000264 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | RWD domain-like | 8041319 | 3000774 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | RWD domain-like | 8041316 | 3000774 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03801 | e5td8A2 | A: alpha bundles | X: CH domain-like | H: Calponin-homology domain-like (From Topology) | T: Calponin-homology domain-like | F: PF03801 | ECOD (1.6) |
A | PF18077 | e5td8A1 | A: extended segments | X: Helical hairpin in Ndc80 (From Topology) | H: Helical hairpin in Ndc80 (From Topology) | T: Helical hairpin in Ndc80 | F: PF18077 | ECOD (1.6) |
B | PF03800 | e5td8B1 | A: alpha bundles | X: CH domain-like | H: Calponin-homology domain-like (From Topology) | T: Calponin-homology domain-like | F: PF03800 | ECOD (1.6) |
C | PF08286 | e5td8C1 | A: a+b two layers | X: Kinetochore globular domain-like (From Topology) | H: Kinetochore globular domain-like (From Topology) | T: Kinetochore globular domain-like | F: PF08286 | ECOD (1.6) |
D | F_UNCLASSIFIED | e5td8D1 | A: a+b two layers | X: Kinetochore globular domain-like (From Topology) | H: Kinetochore globular domain-like (From Topology) | T: Kinetochore globular domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF07686 | e5td8E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | kinetochore protein spc24 | kinetochore protein ndc80 | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18077 | Domain of unknown function (DUF5595) (DUF5595) | Domain of unknown function (DUF5595) | This domain is found in Nude C 80 (Ndc80) proteins which can be found in species such as Homo sapiens. Ndc80 protein complexes are a core component of the end-on attachment sites for kinetochore microtubules. Ndc80 is also known as Hec1, for highly e ... | Domain | |
PF08286 | Spc24 subunit of Ndc80 (Spc24) | Spc24 subunit of Ndc80 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR040967 | Domain of unknown function DUF5595 | Domain | |
IPR038273 | Ndc80 domain superfamily | Homologous Superfamily | |
IPR005550 | Kinetochore protein Ndc80 | Family | |
IPR038275 | Nuf2, N-terminal domain superfamily | Homologous Superfamily | |
IPR005549 | Kinetochore protein Nuf2, N-terminal | Domain | |
IPR013252 | Kinetochore-Ndc80 subunit Spc24 | Family | |
IPR038066 | Spc24, Fungi, globular domain superfamily | Homologous Superfamily | |
IPR038066 | Spc24, Fungi, globular domain superfamily | Homologous Superfamily |