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5TAB
Crystal Structure of the PHD Finger of PHF20
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
PHD
e5tabA1
A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: FYVE/PHD zinc finger
F: PHD
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
3.30.40.10
Alpha Beta
2-Layer Sandwich
Herpes Virus-1
Zinc/RING finger domain, C3HC4 (zinc finger)
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF20826
PhD finger domain (PHD_5)
PhD finger domain
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3].
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
PHD finger protein 20
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
cation binding
ion binding
metal ion binding
small molecule binding
regulation of cellular process
positive regulation of DNA-templated transcription
cellular biosynthetic process
positive regulation of biological process
RNA metabolic process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
positive regulation of metabolic process
DNA-templated transcription
regulation of RNA metabolic process
positive regulation of biosynthetic process
regulation of cellular process
positive regulation of DNA-templated transcription
cellular biosynthetic process
positive regulation of biological process
RNA metabolic process
positive regulation of cellular metabolic process
positive regulation of macromolecule biosynthetic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
positive regulation of metabolic process
DNA-templated transcription
regulation of RNA metabolic process
positive regulation of biosynthetic process
positive regulation of macromolecule metabolic process
regulation of nucleobase-containing compound metabolic process
positive regulation of cellular process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
positive regulation of nucleobase-containing compound metabolic process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
positive regulation of RNA metabolic process
regulation of gene expression
biosynthetic process
positive regulation of RNA biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
cellular process
macromolecule metabolic process
regulation of DNA-templated transcription
regulation of metabolic process
positive regulation of cellular biosynthetic process
transcription by RNA polymerase II
regulation of transcription by RNA polymerase II
cellular component organization
chromatin organization
cellular component organization or biogenesis
Less
protein-containing complex
intracellular anatomical structure
catalytic complex
chromatin
chromosome
transferase complex
cellular anatomical entity
histone acetyltransferase complex
acetyltransferase complex
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
protein acetyltransferase complex
intracellular protein-containing complex
protein-containing complex
intracellular anatomical structure
catalytic complex
chromatin
chromosome
transferase complex
cellular anatomical entity
histone acetyltransferase complex
acetyltransferase complex
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
protein acetyltransferase complex
intracellular protein-containing complex
non-membrane-bounded organelle
membrane-bounded organelle
nuclear membrane
membrane
nucleus
intracellular membrane-bounded organelle
endomembrane system
organelle envelope
nuclear envelope
organelle membrane
cytoplasm
cytosol
membrane-enclosed lumen
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
histone methyltransferase complex
nuclear protein-containing complex
MLL1/2 complex
MLL1 complex
methyltransferase complex
NSL complex
H4 histone acetyltransferase complex
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR001965
Zinc finger, PHD-type
Domain
A
IPR022255
PHD finger protein 20, AT hook
Domain
A
IPR013087
Zinc finger C2H2-type
Domain
A
IPR002999
Tudor domain
Domain
A
IPR013083
Zinc finger, RING/FYVE/PHD-type
Homologous Superfamily
A
IPR041297
DNA repair protein Crb2, Tudor domain
Domain
A
IPR011011
Zinc finger, FYVE/PHD-type
Homologous Superfamily
A
IPR043449
PHD finger protein 20-like
Family
A
IPR019786
Zinc finger, PHD-type, conserved site
Conserved Site
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
A
Pharos
: 
Q9BVI0
amyotrophic lateral sclerosis
Crohn disease
large cell medulloblastoma
osteosarcoma
atypical teratoid rhabdoid tumor
dermatomyositis
malignant glioma
skin carcinoma
cerebrovascular disorder
invasive ductal breast carcinoma
medulloblastoma
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