5QYD
PanDDA analysis group deposition -- Aar2/RNaseH in complex with fragment F2X-Entry E05a
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12134 | e5qydA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12134 | ECOD (1.6) |
B | PF20981 | e5qydB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: N-terminal domain in A1 cistron-splicing factor AAR2 (From Topology) | T: N-terminal domain in A1 cistron-splicing factor AAR2 | F: PF20981 | ECOD (1.6) |
B | PF05282 | e5qydB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF05282 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.34.20 | Mainly Beta | Sandwich | Substrate Binding Domain Of DNAk | Chain A, domain 1 | CATH (utative) |
B | 1.25.40.550 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Aar2, C-terminal domain-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12134 | PRP8 domain IV core (PRP8_domainIV) | PRP8 domain IV core | This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ... | Domain | |
PF05282 | AAR2 C-terminal repeat region (AAR2) | AAR2 C-terminal repeat region | - | Repeat | |
PF20981 | AAR2 N-terminal domain (AAR2_1st) | AAR2 N-terminal domain | This family consists of several eukaryotic AAR2-like proteins. The yeast protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [1]. This entry represents the N-terminal Ig-like domain. | Domain |