5OS9
Structure of the B3 DNA-Binding Domain of NGA1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5os9a_ | All beta proteins | DNA-binding pseudobarrel domain | DNA-binding pseudobarrel domain | B3 DNA binding domain | automated matches | Thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
B | d5os9b_ | All beta proteins | DNA-binding pseudobarrel domain | DNA-binding pseudobarrel domain | B3 DNA binding domain | automated matches | Thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA-binding pseudobarrel domain | 8089660 | 3000213 | SCOP2B (2022-06-29) |
B | SCOP2 Family | B3 DNA binding domain | 8089659 | 4003270 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | DNA-binding pseudobarrel domain | 8089660 | 3000213 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | B3 | e5os9A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
B | B3 | e5os9B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Type II restriction endonuclease effector domain | F: B3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
B | 2.40.330.10 | Mainly Beta | Beta Barrel | At1g16640 B3 domain | DNA-binding pseudobarrel domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02362 | B3 DNA binding domain (B3) | B3 DNA binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015300 | DNA-binding pseudobarrel domain superfamily | Homologous Superfamily | |
IPR003340 | B3 DNA binding domain | Domain | |
IPR044800 | B3 domain-containing transcription factor LEC2-like | Family |