5NZU
The structure of the COPI coat linkage II
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
G [auth R] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Coatomer_WDAD_N | e5nzuA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Coatomer_WDAD_N | ECOD (1.6) |
A | ANAPC4_WD40_18 | e5nzuA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_18 | ECOD (1.6) |
A | Coatomer_WDAD_C | e5nzuA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Coatomer_WDAD_C | ECOD (1.6) |
B | Coatamer_beta_C | e5nzuB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Coatamer_beta_C | ECOD (1.6) |
B | Adaptin_N | e5nzuB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
B | Coatomer_b_Cpla | e5nzuB2 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: Coatomer_b_Cpla | ECOD (1.6) |
D | Adap_comp_sub_1st_1 | e5nzuD3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_1st_1 | ECOD (1.6) |
D | Adap_comp_sub_2nd_1 | e5nzuD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd_1 | ECOD (1.6) |
D | Clat_adaptor_s | e5nzuD1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
E [auth F] | Ras | e5nzuF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
K [auth M] | Ras | e5nzuM1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
G [auth R] | Ras | e5nzuR1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
F [auth G] | COP-gamma_platf | e5nzuG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: COP-gamma_platf | ECOD (1.6) |
F [auth G] | Adaptin_N | e5nzuG3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
F [auth G] | Coatomer_g_Cpla | e5nzuG2 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: Coatomer_g_Cpla | ECOD (1.6) |
I [auth K] | COP-gamma_platf | e5nzuK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: COP-gamma_platf | ECOD (1.6) |
I [auth K] | Adaptin_N | e5nzuK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
I [auth K] | Coatomer_g_Cpla | e5nzuK3 | A: a+b two layers | X: TBP-like | H: Subdomain of clathrin and coatomer appendage domain (From Topology) | T: Subdomain of clathrin and coatomer appendage domain | F: Coatomer_g_Cpla | ECOD (1.6) |
J [auth L] | Clat_adaptor_s | e5nzuL1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
H [auth Z] | Clat_adaptor_s | e5nzuZ1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF14806 | Coatomer beta subunit appendage platform (Coatomer_b_Cpla) | Coatomer beta subunit appendage platform | This family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. | Domain | |
PF04053 | Coatomer WD associated region (Coatomer_WDAD) | Coatomer WD associated region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain | |
F [auth G], I [auth K] | PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla) | Coatomer subunit gamma-1 C-terminal appendage platform | Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ... | Domain |
F [auth G], I [auth K] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
F [auth G], I [auth K] | PF08752 | Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf) | Coatomer gamma subunit appendage platform subdomain | COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ... | Domain |
H [auth Z], J [auth L] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |