5NPD

Crystal Structure of D412N nucleophile mutant cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with alpha Cyclophellitol Aziridine probe CF021


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyYicI C-terminal domain-like 8090409 3000267 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8090411 3000313 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8090413 3001528 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGalactose mutarotase-like 8090408 3000035 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_31_Ce5npdA3 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Glyco_hydro_31_CECOD (1.6)
AGal_mutarotas_2e5npdA4 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: supersandwich (From Topology)T: supersandwichF: Gal_mutarotas_2ECOD (1.6)
ADUF5110e5npdA1 A: beta sandwichesX: Putative glucosidase YicI, C-terminal domain (From Topology)H: Putative glucosidase YicI, C-terminal domain (From Topology)T: Putative glucosidase YicI, C-terminal domainF: DUF5110ECOD (1.6)
AGlyco_hydro_31_Ne5npdA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: Glyco_hydro_31_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.1760 Mainly Beta Sandwich Immunoglobulin-like glycosyl hydrolase (family 31)CATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21365Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd)Glycosyl hydrolase family 31 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain.Domain
PF13802Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain (Gal_mutarotas_2)Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domainThis entry represents the first of three common domains found in Glycosyl hydrolase 31 family proteins. It has a galactose mutarotase superfamily fold.Domain
PF17137Domain of unknown function (DUF5110) (DUF5110)Domain of unknown function (DUF5110)- Family
PF01055Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd)Glycosyl hydrolases family 31 TIM-barrel domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold.Domain