5NNJ
Dimer structure of Sortilin ectodomain crystal form 3, 4.0 Angstrom
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth D] | Sortilin_C_1st,Sortilin-Vps10 | e5nnjD2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 10-bladed | F: Sortilin_C_1st,Sortilin-Vps10 | ECOD (1.6) |
C [auth D] | Sortilin_C_2nd | e5nnjD1 | A: few secondary structure elements | X: Sortilin C-terminal domain (From Topology) | H: Sortilin C-terminal domain (From Topology) | T: Sortilin C-terminal domain | F: Sortilin_C_2nd | ECOD (1.6) |
D [auth C] | Sortilin_C_1st,Sortilin-Vps10 | e5nnjC2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 10-bladed | F: Sortilin_C_1st,Sortilin-Vps10 | ECOD (1.6) |
D [auth C] | Sortilin_C_2nd | e5nnjC1 | A: few secondary structure elements | X: Sortilin C-terminal domain (From Topology) | H: Sortilin C-terminal domain (From Topology) | T: Sortilin C-terminal domain | F: Sortilin_C_2nd | ECOD (1.6) |
A | Sortilin_C_1st,Sortilin-Vps10 | e5nnjA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 10-bladed | F: Sortilin_C_1st,Sortilin-Vps10 | ECOD (1.6) |
A | Sortilin_C_2nd | e5nnjA3 | A: few secondary structure elements | X: Sortilin C-terminal domain (From Topology) | H: Sortilin C-terminal domain (From Topology) | T: Sortilin C-terminal domain | F: Sortilin_C_2nd | ECOD (1.6) |
B | Sortilin_C_1st,Sortilin-Vps10 | e5nnjB2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 10-bladed | F: Sortilin_C_1st,Sortilin-Vps10 | ECOD (1.6) |
B | Sortilin_C_2nd | e5nnjB3 | A: few secondary structure elements | X: Sortilin C-terminal domain (From Topology) | H: Sortilin C-terminal domain (From Topology) | T: Sortilin C-terminal domain | F: Sortilin_C_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D], D [auth C] | PF15902 | Sortilin, neurotensin receptor 3, (Sortilin-Vps10) | Sortilin, neurotensin receptor 3, | - | Repeat |
A, B, C [auth D], D [auth C] | PF15901 | Sortilin, neurotensin receptor 3, C-terminal (Sortilin_C) | Sortilin, neurotensin receptor 3, C-terminal | Sortilin_C is the C-terminal cytoplasmic tail of sortilin, a Vps10p domain-containing family of proteins [1,2]. Most sortilin is expressed within intracellular compartments, where it chaperones diverse ligands, including proBDNF and acid hydrolases. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth D], D [auth C] | IPR031777 | Sortilin, C-terminal | Domain |
A, B, C [auth D], D [auth C] | IPR050310 | VPS10-related sortilin family receptors | Family |
A, B, C [auth D], D [auth C] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
A, B, C [auth D], D [auth C] | IPR006581 | VPS10 | Domain |
A, B, C [auth D], D [auth C] | IPR031778 | Sortilin, N-terminal | Domain |