Annotations: 5NDY

crystal structure of variants

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2B (2022-06-29)
C	SCOP2 Family	FMN-linked oxidoreductases	8064081	4000080	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FMN-linked oxidoreductases	8064082	3000014	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	VP4_haemagglut	e5ndyF1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.2)
E	VP4_haemagglut	e5ndyE1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.2)
D	VP4_haemagglut	e5ndyD1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.2)
C	VP4_haemagglut	e5ndyC1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.2)
B	VP4_haemagglut	e5ndyB1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: VP4_haemagglut	ECOD (v294.2)
A	ID	e5ndyA1	A: beta barrels	X: Phosphorylase/hydrolase-like	H: Ribosomal protein S5 domain 2-like	T: Ribosomal protein S5 domain 2-like	F: ID	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)
E	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)
D	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)
C	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)
B	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)
A	3.20.20.390	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	FMN-linked oxidoreductases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01884	PcrB family (PcrB)	PcrB family	This family contains proteins that are related to PcrB Swiss:Q53726. The function of these proteins is unknown.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Geranylgeranylglyceryl phosphate synthase	prenyltransferase activity heptaprenylglyceryl phosphate synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding phosphoglycerol geranylgeranyltransferase activity	glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process glycerolipid metabolic process glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR008205	Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase	Family
A, B, C, D, E A, B, C, D, E, F	IPR038597	GGGP/HepGP synthase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR039074	GGGP/HepGP synthase group I	Family
A, B, C, D, E A, B, C, D, E, F	IPR010946	Geranylgeranylglyceryl phosphate synthase	Family

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